Locus 137

Sequence ID 3R_DroMel_CAF1
Location 738,797 – 738,891
Length 94
Max. P 0.847276
window220

overview

Window 0

Location 738,797 – 738,891
Length 94
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 80.09
Mean single sequence MFE -27.52
Consensus MFE -16.92
Energy contribution -17.48
Covariance contribution 0.56
Combinations/Pair 1.20
Mean z-score -2.05
Structure conservation index 0.61
SVM decision value 0.77
SVM RNA-class probability 0.847276
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 738797 94 + 27905053
UUUGUUUCAUGUAAGCCAGC-AAAAGCGGAGAACAUAUAACAAAAUGAGGGUGGUCGUUGAUGCGCGGUUCACCCUUGUUCUCCUUUGUUUUUCG
.(((((..((((...((.((-....))))...))))..)))))((..(((((((.(((....)))....)))))))..))............... ( -24.30)
>DroSec_CAF1 6253 84 + 1
UUUGUUUCAUGUAAGCCAGC-GAAAGCUGAGAACAUAUAACAAAAUGGGGGUGGUCGUU----------CCACCCUUGUUCGCCUUUGUUUUUCG
.(((((..((((...(((((-....)))).).))))..)))))((..(((((((.....----------)))))))..))............... ( -30.00)
>DroSim_CAF1 6262 84 + 1
UUUGUUUAAUGUGAGCCAGC-GAAAGCUGAGAACAUAUAACAAAAUGGGGGUGGUCGUU----------CCACCCUUGUUCGCCUUUGUUUUUCG
.(((((..(((((..(((((-....)))).)..))))))))))((..(((((((.....----------)))))))..))............... ( -30.50)
>DroEre_CAF1 6598 95 + 1
UCCCUUUCGUGUAAGCCAGCGAAAAGCGGAGAACAAAUAUCACAAUGGGGGUGGUCGUUGAUGUGCGUUCCACCCCUGUUCUCCUUUGUUUUUCG
....((((((........))))))..(((((((((((......(((((((((((.(((......)))..)))))))))))....))))))))))) ( -34.80)
>DroYak_CAF1 6841 90 + 1
UCCGUUUCAUCCAAGUCAGC-AAAAGCGGGGAACAAAUAAUAAAAUGGGGGUGGUCGUUGGUGUGCGUUCCACACUU----UUCUUUGUUUUUCG
..................((-....))(..(((((((.........((((((((.(((......)))..)))).)))----)..)))))))..). ( -18.00)
>consensus
UUUGUUUCAUGUAAGCCAGC_AAAAGCGGAGAACAUAUAACAAAAUGGGGGUGGUCGUUG_UG_GCG_UCCACCCUUGUUCUCCUUUGUUUUUCG
..........................(((((((((........(((((((((((...............)))))))))))......))))))))) (-16.92 = -17.48 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:05 2006