Locus 1361

Sequence ID 3R_DroMel_CAF1
Location 4,001,085 – 4,001,178
Length 93
Max. P 0.782307
window2240

overview

Window 0

Location 4,001,085 – 4,001,178
Length 93
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.79
Mean single sequence MFE -21.55
Consensus MFE -16.44
Energy contribution -17.44
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.76
SVM decision value 0.56
SVM RNA-class probability 0.782307
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4001085 93 - 27905053
UUGGGUGGCUUACUUGGGCAGCCCUUCUUC---------------------------UCGACAUUUAAUUCGCCUUGAUUAAAGUGUCUUGCCAAAUCAUGCCACAUUAAUUAUGACCCA
.((((((((.......(((((.........---------------------------..(((((((((((......)))).)))))))))))).......))).(((.....)))))))) ( -22.84)
>DroSec_CAF1 6691 93 - 1
UUGGGUGGCUCACUGGGGCAGCCCUUCUUC---------------------------UCGACAUUUAAUUCGCCUUGAUUAAAGUGUCUUGCCAAAUCAUGCCACAUUAAUUAUGACCCA
.((((((((.......(((((.........---------------------------..(((((((((((......)))).)))))))))))).......))).(((.....)))))))) ( -22.84)
>DroSim_CAF1 6754 93 - 1
UUGGGUGGCUCACUGGGGCAGCCCUUCUUC---------------------------UCGACAUUUAAUUCGCCUUGAUUAAAGUGUCUUGCCAAAUCAUGCCACAUUAAUUAUGACCCA
.((((((((.......(((((.........---------------------------..(((((((((((......)))).)))))))))))).......))).(((.....)))))))) ( -22.84)
>DroYak_CAF1 6585 117 - 1
UUGGGUGGCUCACAC---AAGCCCUUCUUCCUCUCUUCCCUUGUUCCCCUCUACAUUUCUACAUUUAAUUCGCCUUGAUUAAAGUGUCUUGCCAAAUCAUGCCACAUCAAUUAUGACCCA
.((((((((..((((---.......................(((........)))........(((((((......)))))))))))...))))..(((((..........))))))))) ( -17.70)
>consensus
UUGGGUGGCUCACUGGGGCAGCCCUUCUUC___________________________UCGACAUUUAAUUCGCCUUGAUUAAAGUGUCUUGCCAAAUCAUGCCACAUUAAUUAUGACCCA
.((((((((.......(((((.....)................................(((((((((((......)))).))))))).)))).......))).(((.....)))))))) (-16.44 = -17.44 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:04 2006