Locus 136

Sequence ID 3R_DroMel_CAF1
Location 736,298 – 736,418
Length 120
Max. P 0.817091
window219

overview

Window 9

Location 736,298 – 736,418
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.67
Mean single sequence MFE -37.47
Consensus MFE -29.36
Energy contribution -30.34
Covariance contribution 0.98
Combinations/Pair 1.12
Mean z-score -1.84
Structure conservation index 0.78
SVM decision value 0.67
SVM RNA-class probability 0.817091
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 736298 120 + 27905053
ACGCGAACGGAUGCACGUACUGGGCAGCGGAAAAUGCAGUGAAAAUUGCCAGAAAAGUCAGGGGACAGCAUGUGCGGGCAAAUUCAAGCGAAGCAUUCGAUUAACUGCCAGAGUGCGCGA
.((((..(((((((.(((((...((..........(((((....))))).......(((....))).))..))))).((........))...)))))))....(((.....))).)))). ( -36.10)
>DroSec_CAF1 3881 120 + 1
ACGCGAACGGAUGCUCGUACUGGGCAGCGGAAAAUGCAGUGAAAAUUGCCAGAAAAGUCAGGGGACAACAUGUGCGGGCAAAUCCAAGCGAAGCAUUCGAUUAACUGCGAGAGUGCGCGA
.(((....(((((((((((((((((.(((.....)))(((....))))))......(((....)))..)).)))))))))..))).......((((((............))))))))). ( -40.40)
>DroSim_CAF1 3876 120 + 1
ACGCGAACGGAUGCUCGUACUGGGCAGCGGAAAAUGCAGUGAAAAUUGCCAGAAAAGCCAGGGGACAACAUGUGCGGGCAAGUCCAAGCGAAGCAUUCGAAUAACUGCGAGAGUGCGCGA
.((((..(((((((((((..(((((..........(((((....))))).......(((...(.((.....)).).)))..))))).))).)))))))).......((....)).)))). ( -42.00)
>DroEre_CAF1 3983 120 + 1
ACGCGAACGGAUGCACGUACUGGGCAGCGGAAAAAGCAGUGAAAAUUGCCAGAAAAGUUAGGGGACAUCAUGUGCGGGCAAAUCCAACCGAAGCAUUUGAUUCACUGCGAGAGUGCGCGA
.((((..(((((((.((((((((..(((.......(((((....))))).......))).(....).))).)))))((.....)).......)))))))...((((.....)))))))). ( -33.24)
>DroYak_CAF1 4489 120 + 1
ACGCGAACGGAUGCACGUACUGGGCAGCGGAAAAAGCUGUGAAAAUUGCCAGAAAAGUCAGAGGACAGCAUGUGCGGGAACAUCCAACCGAAGCGUUUGAUAAACUGCGAUAGUGCGCGA
.((((.((((((((((((.(((((((((.......)))))........))))....(((....)))...))))))(....))))).......(((.((....)).)))....)).)))). ( -35.60)
>consensus
ACGCGAACGGAUGCACGUACUGGGCAGCGGAAAAUGCAGUGAAAAUUGCCAGAAAAGUCAGGGGACAACAUGUGCGGGCAAAUCCAAGCGAAGCAUUCGAUUAACUGCGAGAGUGCGCGA
.((((..(((((((.(((((((((((((.......)).((....))))))......(((....)))..)).)))))((.....)).......))))))).......((....)).)))). (-29.36 = -30.34 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:04 2006