| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,971,750 – 3,971,844 |
| Length | 94 |
| Max. P | 0.612186 |
| Location | 3,971,750 – 3,971,844 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 77.67 |
| Mean single sequence MFE | -24.02 |
| Consensus MFE | -13.64 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3971750 94 + 27905053 UUUAUAUGGC-UGGUCAUUGCUUAUGCAUUGAUCACCGUAUUUUUUCGUCUGAUGGACUCGCUUGAAA-UUGGU------AUUGGAAUUAGACUAACAGUUU ...((((((.-((((((.(((....))).))))))))))))......(((((((......(((.....-..)))------......)))))))......... ( -25.00) >DroPse_CAF1 19622 86 + 1 UUUAUAUGGC-UGGUCAUUGCCUAUGCAUUGAUCACCGCACUUGGCCAAGUGAUGGACUGGGCAGGAG-UUACU------AUUACAGUUAG--------UAC .......((.-((((((.(((....))).))))))))((.((((.(((.((.....))))).)))).)-)((((------(.......)))--------)). ( -24.60) >DroEre_CAF1 19007 95 + 1 UUUAUAUGGC-UGGUCAUUGCUUAUGCAUUGAUCACCGUAUUUUUUCGUCUGAUGGACUCACUCGAAUUUUGGU------AUUGGAAUUAGACUAACAGUUU ...((((((.-((((((.(((....))).))))))))))))......(((((((......(((........)))------......)))))))......... ( -24.20) >DroYak_CAF1 20307 94 + 1 UUUAUAUGGC-UGGUCAUUGCUUAUGCAUUGAUCACCGUAUUUUUUCGUCUGAUGGACUCGCUCGAAA-UUGGU------AUUGGAAUUAGACUAACAGUUU ...((((((.-((((((.(((....))).))))))))))))......(((((((......(((.....-..)))------......)))))))......... ( -24.20) >DroAna_CAF1 19360 101 + 1 UUUAUAUGGCCUGGCCAUUGCUUAUGCAUUGAUCACCGUAUUUUUUCGCCUGAUGGACUCCGUGGAAA-UAGGCAUACGAAUUGGAAUUAGAAUGACAGUUU ...((((((..((..((.(((....))).))..))))))))......(((((((((...)))).....-)))))....((((((..((....))..)))))) ( -21.50) >DroPer_CAF1 20932 86 + 1 UUUAUAUGGC-UGGUCAUUGCCUAUGCAUUGAUCACCGCACUUGGCCAAGUGAUGGACUGGGCAGGAG-UUACU------AUUACAGUUAG--------UAC .......((.-((((((.(((....))).))))))))((.((((.(((.((.....))))).)))).)-)((((------(.......)))--------)). ( -24.60) >consensus UUUAUAUGGC_UGGUCAUUGCUUAUGCAUUGAUCACCGUAUUUUUUCGUCUGAUGGACUCGCUAGAAA_UUGGU______AUUGGAAUUAGACUAACAGUUU ....(((((..((((((.(((....))).))))))))))).........(((((......(((........)))......)))))................. (-13.64 = -13.70 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:24 2006