| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,970,152 – 3,970,249 |
| Length | 97 |
| Max. P | 0.736132 |
| Location | 3,970,152 – 3,970,249 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.12 |
| Mean single sequence MFE | -23.50 |
| Consensus MFE | -18.52 |
| Energy contribution | -19.30 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.736132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3970152 97 + 27905053 AAUUUAAUCAAAUUAGCUGAGAAAUGCAGUGGAAUGGAAUUGUUCGUUCGGCCA----GCGAGAGGCAGA-AACUCAUUACGUUAAUCAGUUGAUUGUGCGA--------- ..........((((((((((..((((.(((((((((((....))))))).(((.----......)))...-....)))).))))..))))))))))......--------- ( -25.80) >DroPse_CAF1 17740 97 + 1 AAUUUAAUCAAAUUAGCUGAGAACUCUAAUGGAAUGAGAUUGUUUG----GC---------AGCAGCAGA-GGCUCAUUUGGUUAAUCAGUGGAUUGUGUGUGGUGGUGGG ....(((((......(((((......((((.(((((((.(((((..----..---------...))))).-..))))))).)))).))))).))))).............. ( -18.20) >DroSim_CAF1 18392 97 + 1 AAUUUAAUCAAAUUAGCUGAGAAAUGCAGUGGAAUGAAAUUGUUCGUUCGGCCA----GCGAGAGGCAGA-AACUCAUUACGUUAAUCAGUUGAUUGUGCGA--------- ..........((((((((((..((((.(((((((((((....))))))).(((.----......)))...-....)))).))))..))))))))))......--------- ( -26.30) >DroEre_CAF1 17390 98 + 1 AAUUUAAUCAAAUUAGCUGAGAAACGCAGUGGAAUGAAAUUGUUCGUUCGGCCA----GAGCGAGGCAGAAAACUCAUUACGUUAAUCAGUUGAUUGUGCGA--------- ..........((((((((((..((((.(((((((((((....))))))).(((.----......)))........)))).))))..))))))))))......--------- ( -28.10) >DroYak_CAF1 18568 101 + 1 AAUUUAAUCAAAUUAGCUGAGAAAUGCAGUGGAAUGAAAUUGUUCGUUCGGCCAGUGAGAGAGAGGCAGA-AACUCAUUACGUUAAUCAGUUGAUUGUGCGA--------- ..........((((((((((..((((.(((((((((((....))))))).(((..(....)...)))...-....)))).))))..))))))))))......--------- ( -26.50) >DroAna_CAF1 17702 84 + 1 AAUUUAAUCAAAUUAGCUGAGAAAUGCAAUGGAAUGGAAUUGUUUG-----------------GAGCAGA-AACUCAUUACGUUAAUCAGUUGAUUGUGCGA--------- ..........((((((((((..((((.(((((...(...((((...-----------------..)))).-..)))))).))))..))))))))))......--------- ( -16.10) >consensus AAUUUAAUCAAAUUAGCUGAGAAAUGCAGUGGAAUGAAAUUGUUCGUUCGGCCA____G_GAGAGGCAGA_AACUCAUUACGUUAAUCAGUUGAUUGUGCGA_________ ..........((((((((((..((((.(((((((((((....))))))).(((...........)))........)))).))))..))))))))))............... (-18.52 = -19.30 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:23 2006