| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,966,427 – 3,966,535 |
| Length | 108 |
| Max. P | 0.782766 |
| Location | 3,966,427 – 3,966,535 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 87.58 |
| Mean single sequence MFE | -28.90 |
| Consensus MFE | -25.60 |
| Energy contribution | -25.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.782766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3966427 108 + 27905053 UC---ACAAAAAGAUAAUUUAUCCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGAUGUUAAUUAAUU ..---.........(((((.((..((.((((((((((.......))))).....((((((.....)))))).((((........))))..))))).))..)).)))))... ( -27.10) >DroSim_CAF1 14619 108 + 1 UC---ACAAAAAGAUAACUUAUCCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGAUGUUAUCUUUUU ..---..(((((((((((......((.((((((((((.......))))).....((((((.....)))))).((((........))))..))))).))..))))))))))) ( -34.00) >DroEre_CAF1 13260 104 + 1 --AAAACAAAAAGUUA-----ACCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGAUGUAAAUUCGCG --..............-----...((.((((((((((.......))))).....((((((.....)))))).((((........))))..))))).))............. ( -25.60) >consensus UC___ACAAAAAGAUAA_UUAUCCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGAUGUUAAUUAAUU ........................((.((((((((((.......))))).....((((((.....)))))).((((........))))..))))).))............. (-25.60 = -25.60 + -0.00)
| Location | 3,966,427 – 3,966,535 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 87.58 |
| Mean single sequence MFE | -33.70 |
| Consensus MFE | -29.40 |
| Energy contribution | -29.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3966427 108 - 27905053 AAUUAAUUAACAUCGGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGGAUAAAUUAUCUUUUUGU---GA ...(((((....(((((((((((((((..........))))).......(((((....)))))((((.......))))))))))))))....))))).........---.. ( -30.70) >DroSim_CAF1 14619 108 - 1 AAAAAGAUAACAUCGGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGGAUAAGUUAUCUUUUUGU---GA (((((((((((.(((((((((((((((..........))))).......(((((....)))))((((.......)))))))))))))).....)))))))))))..---.. ( -39.00) >DroEre_CAF1 13260 104 - 1 CGCGAAUUUACAUCGGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGGU-----UAACUUUUUGUUUU-- .(((((.(((..(((((((((((((((..........))))).......(((((....)))))((((.......))))))))))))))..-----)))...)))))...-- ( -31.40) >consensus AAAAAAUUAACAUCGGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGGAUAA_UUAUCUUUUUGU___GA ............(((((((((((((((..........))))).......(((((....)))))((((.......))))))))))))))....................... (-29.40 = -29.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:20 2006