Locus 1337

Sequence ID 3R_DroMel_CAF1
Location 3,943,003 – 3,943,114
Length 111
Max. P 0.944436
window2186

overview

Window 6

Location 3,943,003 – 3,943,114
Length 111
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 93.16
Mean single sequence MFE -23.93
Consensus MFE -19.82
Energy contribution -20.02
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.83
SVM decision value 1.34
SVM RNA-class probability 0.944436
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3943003 111 + 27905053
AUACCAUCCACCAUAUAACCCCAUUUGAUCCCAUACCAUCGCCCUGGCAUC----CCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCAUCAGAUGAC
.....................((((((((...............(((((..----(..((((.....)))).)..))))).(((((.((....)).)))))....)))))))).. ( -24.00)
>DroSec_CAF1 11041 111 + 1
AUUCCAUCCACUAUAUAGCCCCAUUUGAUCCCAUACCAUCGGCCAGGCAUC----CCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCACCAGAUGAC
.....................((((((...........(((((((((....----((((.((.(((((....))))).)).))))......)))).)))))......)))))).. ( -25.53)
>DroSim_CAF1 11546 111 + 1
AUACCAUCCACCAUAUAGCCCCAUUUGAUCCCAUACCAUCGGCCAGGCAUC----CCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCACCAGAUGAC
.....................((((((...........(((((((((....----((((.((.(((((....))))).)).))))......)))).)))))......)))))).. ( -25.53)
>DroEre_CAF1 11259 102 + 1
---------ACCAUAUAGCCCCAUUUGAUCCCAUACCAUCGCCCAGGCAUC----CCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCACCAGAUGAC
---------.....(((((.......(((........)))((....))...----...)))))......((((((((....(((((.((....)).)))))......)))))))) ( -22.30)
>DroYak_CAF1 11400 115 + 1
AUACCAUCCACCAUAUAGCCCCAUUUGAUCCCAUACCAUCGCCCAGGCAUCCAUACCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCACCAGAUGAC
..............(((((.......(((........)))((....))..........)))))......((((((((....(((((.((....)).)))))......)))))))) ( -22.30)
>consensus
AUACCAUCCACCAUAUAGCCCCAUUUGAUCCCAUACCAUCGCCCAGGCAUC____CCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCACCAGAUGAC
..............(((((.......(((.((.............)).))).......)))))......((((((((....(((((.((....)).)))))......)))))))) (-19.82 = -20.02 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:05 2006