Locus 1333

Sequence ID 3R_DroMel_CAF1
Location 3,931,857 – 3,931,950
Length 93
Max. P 0.805154
window2179

overview

Window 9

Location 3,931,857 – 3,931,950
Length 93
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.10
Mean single sequence MFE -19.51
Consensus MFE -17.38
Energy contribution -16.66
Covariance contribution -0.72
Combinations/Pair 1.18
Mean z-score -1.35
Structure conservation index 0.89
SVM decision value 0.63
SVM RNA-class probability 0.805154
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3931857 93 - 27905053
AA--GAGAGAGGGAUUAAUACGUUCUCCCUGUCCCGCUCUUUUGAUUGGUUUGAGUGUAAUCUUAAAUUGUACGAUUUUUCUUAUUGCUUAUUUC
((--(((((.(((((...............))))).)))))))(((.(((.((((...((((.((.....)).))))...))))..))).))).. ( -18.76)
>DroSec_CAF1 118 93 - 1
AA--GAGAGAGGGAUUAAUACGUUCUCCCUGUCCCGUUCUUUUGAUUGGUUUAAGUGUAAUCUUAAAUUGUACGAUUUUUCUUAUUGCUUAUUUC
((--(((((((((((...............)))))......(((..(((((((((......)))))))))..)))))))))))............ ( -16.36)
>DroSim_CAF1 121 93 - 1
AA--GAGAGAGGGAUUAAUACGUUCUCCCUGUCCCGCUCUUUUGAUUGGUUUAAGUGUAAUCUUAAAUUGUACGAUUUUUCUUAUUGCUUAUUUC
((--(((((.(((((...............))))).)))))))(((.(((.((((...((((.((.....)).))))...))))..))).))).. ( -18.66)
>DroEre_CAF1 135 93 - 1
GA--GAGAGAGGGAUUAAUUCGUUCUCCCUGUCCCGCUCUCUUGAUUGGUUUAAGUGUAAUCUUAAAUUGUACGAUUUUUCUUAUUGCUUAUUUC
((--(((((.(((((...............))))).)))))))(((.(((.((((...((((.((.....)).))))...))))..))).))).. ( -21.66)
>DroYak_CAF1 274 95 - 1
GACAGAGAGAGGGAUUAAUUCGUUUUCCCUGUCUCGCUCUCUUGAUUGGUUUAAGUGUAAUCUUAAAUUGUACGAGUUUUCUUAUUGCUUAUUUC
....((((.(((((...........))))).)))).....((((..(((((((((......)))))))))..))))................... ( -22.10)
>consensus
AA__GAGAGAGGGAUUAAUACGUUCUCCCUGUCCCGCUCUUUUGAUUGGUUUAAGUGUAAUCUUAAAUUGUACGAUUUUUCUUAUUGCUUAUUUC
....(((((.(((((...............))))).)))))(((..(((((((((......)))))))))..))).................... (-17.38 = -16.66 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:58 2006