| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,925,897 – 3,926,015 |
| Length | 118 |
| Max. P | 0.541109 |
| Location | 3,925,897 – 3,926,015 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.89 |
| Mean single sequence MFE | -38.44 |
| Consensus MFE | -18.50 |
| Energy contribution | -19.00 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.541109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3925897 118 - 27905053 UUUUAUAUUCUUUCUGGACAGACUGCCCACUGCAAAGGUCAUACCCUCGAGGGCACAUGAUUCUUUGAUGGUCACGGGCAGU-CCCAGCAAUGGACGUUCUUCGAAGAGCUUCUC-CACC .......((((((..((((.((((((((((((((((((((((.(((....)))...)))).)))))).))))...)))))))-)(((....)))..))))...))))))......-.... ( -40.30) >DroPse_CAF1 398 118 - 1 UUUCACAUUCCUUCUGGCCAAACUUCCCACGGCAAAGGUCAUGCCGCCCAGGGCACAAGAUUCUUUCACUGUUAGGGGAAGU-CCCAGAAGGGGGCGAUCUUUGAACAGCUUCUC-CACA ........(((((((((....(((((((((((.(((((((.((((......))))...)).)))))..))))...)))))))-.)))))))))((.((.((......))..)).)-)... ( -36.50) >DroEre_CAF1 717 118 - 1 UUUGACAUUCUUUCUGGACAGACUGCCCACGGCAAAGGUCAUGCCCUCGAGGGCACACGACUCUUUGACGGUCACGGGCAGU-CCCAGUAGUGGACGUUCUUGGAAGAGCUUCUC-CACA .............((((...((((((((((.(((((((((.(((((....)))))...))).))))).).))...)))))))-)))))..(((((.(((((....)))))...))-))). ( -49.00) >DroWil_CAF1 145 118 - 1 UUUGAUUGUCUUUCUUGCCAAACUGCCCACAGCAAAAGACAUGCCAUCGAGAGCACAUGAUUCCUUCACUGUCAUGGGCAAA-CCCAAAAGCGGACGAUCUUGAAAGAGUUUAUC-CACA ((((..(((((((..(((.............))))))))))((((..(....)..((((((.........))))))))))..-..)))).(.(((..(.(((....))).)..))-).). ( -26.62) >DroAna_CAF1 486 118 - 1 UUUUACAUUUUUCCGGAAGAGACUGCCCACAGAAAAGGUCAUUCCUUCGAGGGCACAUGACUCCUUGACGGUCAUGGGCAGU-CCCAGCAGGGGACGCUCUUCGAAAAGCUUCUC-CACC .......((((((..((((((..((((((..((.....))...((.(((((((........))))))).))...))))))((-(((.....))))).))))))))))))......-.... ( -37.50) >DroPer_CAF1 358 120 - 1 UUUCACAUUCCUUCUGGCCAAACUUCCCACGGCAAAGGUCAUGCCGCCCAGGGCACAAGAUUCUUUCACUGUUAGGGGAAGUUCCCAGAAGGGGGCGAUCUUUGAACAGCUUCUCCCACA .........((((((((...((((((((((((.(((((((.((((......))))...)).)))))..))))...)))))))).))))))))(((.((.((......))..)).)))... ( -40.70) >consensus UUUCACAUUCUUUCUGGACAAACUGCCCACGGCAAAGGUCAUGCCCUCGAGGGCACAUGAUUCUUUCACGGUCACGGGCAGU_CCCAGAAGGGGACGAUCUUCGAAGAGCUUCUC_CACA ........(((..((((....(((((((((((..((((...((((......)))).......))))..))))...)))))))..))))....)))......................... (-18.50 = -19.00 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:56 2006