Locus 133

Sequence ID 3R_DroMel_CAF1
Location 723,656 – 723,757
Length 101
Max. P 0.848625
window215

overview

Window 5

Location 723,656 – 723,757
Length 101
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 75.46
Mean single sequence MFE -15.97
Consensus MFE -10.06
Energy contribution -10.58
Covariance contribution 0.53
Combinations/Pair 1.09
Mean z-score -1.57
Structure conservation index 0.63
SVM decision value 0.78
SVM RNA-class probability 0.848625
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 723656 101 + 27905053
GCACACACCCUCACCCAGUUUGGAACUCGAUAAGCUGGA-AAUCUCCCACGUUCCACUAAGGAACCC-AACGAAGCCAAACCAGCAAUUACACAGCGAAUUAA
..........((.....((((((...(((.......(((-....)))...(((((.....)))))..-..)))..))))))..((.........))))..... ( -18.10)
>DroPse_CAF1 140294 102 + 1
AUAUAUGCACUCCCCCAAUGAAGUGUUCGAUAAGCGGGAAAAUCUCCCACGUUCCACUAAGGAACCC-AACGAAACCAAAUCAACAAUUACACAGCGAAUUAA
.(((..(((((.(......).)))))...))).((((((.....))))..(((((.....)))))..-..........................))....... ( -18.60)
>DroEre_CAF1 133762 79 + 1
G----------------------AACUUGAUAAGCGGGA-AAUCUCCCACGUUCCACUGAGCCACCC-AACGAAACCAAGUCAGCAAUUACACAGCGAAUUAA
(----------------------(.((((....(.((((-....)))).)((((....)))).....-........)))))).((.........))....... ( -12.80)
>DroYak_CAF1 146798 101 + 1
GCACAUACCCUCACCCAGUAUGGAACUCGAUAAGCGGAA-AAUCUCCCACGUUCCACUAAGGAACCA-AACUAAACCAAAUCAGCAAUUACACAGCAAAUAAA
((.(((((.........)))))...........(((((.-....)))...(((((.....)))))..-...............)).........))....... ( -15.60)
>DroAna_CAF1 135295 80 + 1
-----------------------AGAGUGAUAAGCGGGAAAAUCUCCCACGUUCUAUUAAGGAACCCGAACGAAACCAAAUCAACAAUUACCCAGCGAAUUAA
-----------------------....((((..((((((.....)))).(((((.............)))))......................))..)))). ( -13.62)
>DroPer_CAF1 140489 101 + 1
AUGUAUGCAC-CCCCCAAUGAAGUGUUCGAUAAGCGGGAAAAUCUCCCACGUUCCACUAAGGAACCC-AACGAAACCAAAUCAACAAUUACACAGCGAAUUAA
..........-.......(((..((((((....(.((((.....)))).)(((((.....)))))..-..))))..))..))).................... ( -17.10)
>consensus
G_A_AU_C_C_C_CCCA_U___GAACUCGAUAAGCGGGA_AAUCUCCCACGUUCCACUAAGGAACCC_AACGAAACCAAAUCAACAAUUACACAGCGAAUUAA
.................................((((((.....))))..(((((.....))))).............................))....... (-10.06 = -10.58 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:00 2006