| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,902,922 – 3,903,028 |
| Length | 106 |
| Max. P | 0.606122 |
| Location | 3,902,922 – 3,903,028 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 91.90 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -22.99 |
| Energy contribution | -23.18 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3902922 106 - 27905053 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAA------AAACC--CCCCGGGCACCAUAACAAAAUGGUAAGCGACACUUGCUACAAACAC ....((((..(((((((((((((.((((.((...)).))))..))))))......------...((--(...))).(((((......))))).))))))).))))......... ( -25.80) >DroSec_CAF1 26144 106 - 1 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAU------AAACC--CCCGGGGCACCAUAACAAAAUGGUAAGCGACACUUGCUACAAGCUC ....((((..(((((((((((((.((((.((...)).))))..))))))......------...((--....))..(((((......))))).))))))).))))......... ( -26.40) >DroSim_CAF1 26562 107 - 1 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAAA-----AAACC--CCCCGGGCACCAUAACAAAAUGGUAAGCGACACUUGCUACAAGCAC ....((((..(((((((((((((.((((.((...)).))))..)))))).......-----...((--(...))).(((((......))))).))))))).))))......... ( -25.80) >DroEre_CAF1 26024 107 - 1 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAA------AAACC-CCCACGGGCACCAUAACAAAAUGGUAAGCGACACUUGCUACAAGCAU ....((((..(((((((((((((.((((.((...)).))))..))))))......------...((-(....))).(((((......))))).))))))).))))......... ( -26.80) >DroYak_CAF1 27689 108 - 1 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAGGGCAUAAAA------AAAUCCCCCCUGGGCACCAUAACAAAAUGGUAAGCGACACUUGCGACAAGCAG ...(((.(((((..((((((.........))))))))))).(((((.((......------....(((....))).(((((......)))))..))....))))).....))). ( -28.40) >DroAna_CAF1 27397 113 - 1 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAAAAGAAUAAACC-CCCCGUGGCACAACAACAAAAUGGUAAGCGACACUUGCCACGAGGAU ((.(((.(((((..((((((.........))))))))))).))).))...................-((.(((((((...((......))((.....))...))))))).)).. ( -27.90) >consensus CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAA______AAACC__CCCCGGGCACCAUAACAAAAUGGUAAGCGACACUUGCUACAAGCAC ....((((..(((((((((((((.((((.((...)).))))..))))))...........................(((((......))))).))))))).))))......... (-22.99 = -23.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:52 2006