Locus 1326

Sequence ID 3R_DroMel_CAF1
Location 3,899,313 – 3,899,404
Length 91
Max. P 0.846245
window2171

overview

Window 1

Location 3,899,313 – 3,899,404
Length 91
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 90.57
Mean single sequence MFE -23.67
Consensus MFE -20.99
Energy contribution -21.77
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.17
Structure conservation index 0.89
SVM decision value 0.77
SVM RNA-class probability 0.846245
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3899313 91 + 27905053
GAAAAACCCACUAUCGAUUCACAUUCCUCAGAAAAAAGGUUUAUCCCAUGGCGAAAGGCAACCGUAUGUUUUUCGCUAGGAGCUGGAAA--------AU
.................(((.((((((..........((......)).((((((((((((......)))))))))))))))).))))).--------.. ( -21.30)
>DroSec_CAF1 22498 99 + 1
GAAAAAUCCACUAUCGAUGCACAUUCCUCAGAAAAAAGGUGUAUCCCAUAGCGAAAGGCAACCAUAUGUUUUCCGCUAGGAGCUGGAAACAUAUCCCAU
......((((((...(((((((.(((....))).....)))))))((.(((((.((((((......)))))).))))))))).))))............ ( -25.00)
>DroSim_CAF1 22933 99 + 1
GAAAAAUCCACUAUCGAUGCACAUUCCUCAGAAAAAAGGUGUAUCCCAUGGCGAAAGGCAACCAUAUGUUUUCCGCUAGGAGCUGGAAACAUAUCCCAU
......((((((...(((((((.(((....))).....)))))))((.(((((.((((((......)))))).))))))))).))))............ ( -24.70)
>consensus
GAAAAAUCCACUAUCGAUGCACAUUCCUCAGAAAAAAGGUGUAUCCCAUGGCGAAAGGCAACCAUAUGUUUUCCGCUAGGAGCUGGAAACAUAUCCCAU
......((((((...(((((((.(((....))).....)))))))((.(((((.((((((......)))))).))))))))).))))............ (-20.99 = -21.77 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:51 2006