| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,897,699 – 3,897,817 |
| Length | 118 |
| Max. P | 0.522769 |
| Location | 3,897,699 – 3,897,817 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.49 |
| Mean single sequence MFE | -32.73 |
| Consensus MFE | -22.99 |
| Energy contribution | -22.67 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3897699 118 + 27905053 CGGACCUCUCUUUCACUCAGUUGGGGCUAUCACCACUUAGCCGCUGUCUUCUUCACUUGUUAUGGAGCUAAUGUUUGCUGGGCGCGCUUUGUACUUUAGCUUUUUAUUAGGGCAGCAU ....((...((.......))..))(((((........)))))((((((..(((((.......)))))((((((...((((((..(.....)..).)))))....)))))))))))).. ( -28.30) >DroEre_CAF1 19742 118 + 1 CGGAGCUCUCUCUCGCUCCGCUCGAGCUAUCGCCACUUAACUGCUGUCUCCUUCACUCGUUAUGGAGCUAAUGUUUGCUGGGCGCGCUUUGCGCUUUAGCAUUUUAUUGGGGCAGCAU ((((((........))))))..(((....))).........(((((((..(((((.......)))))((((((..((((((((((.....)))).))))))...))))))))))))). ( -40.40) >DroYak_CAF1 22442 106 + 1 CGGACCUCUCUUUC----CAC--------UUUCCACUUAGCUGCUGUCUCCCUCACUCGUUAUGGACCUAAUGUUUGCUGGGCGCGCUUUGUGCUUUAGCUUUUUAUUAGGGCAGCAU .(((........))----)..--------..........(((((......((...........)).(((((((...(((((((((.....)))).)))))....)))))))))))).. ( -29.50) >consensus CGGACCUCUCUUUC_CUCCGCU_G_GCUAUCACCACUUAGCUGCUGUCUCCUUCACUCGUUAUGGAGCUAAUGUUUGCUGGGCGCGCUUUGUGCUUUAGCUUUUUAUUAGGGCAGCAU ..........................................(((((((((............))).((((((...(((((((((.....)))).)))))....)))))))))))).. (-22.99 = -22.67 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:50 2006