| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,895,138 – 3,895,238 |
| Length | 100 |
| Max. P | 0.792248 |
| Location | 3,895,138 – 3,895,238 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.93 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -17.14 |
| Energy contribution | -17.20 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.792248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3895138 100 + 27905053 AUCAUUAUUAUAGCUGGCAAAUGUCAGGCUGAAAUUAGUUGCCUUGUG-----UUGUACGGCUCAUCAACCAAA---AAAAAAAAAAAAAGGAU--CGACCCAAUGAUGA .((((((((..(((((...((..(.((((...........)))).)..-----))...)))))...........---.............((..--....)))))))))) ( -20.70) >DroSec_CAF1 18340 94 + 1 AUCAUUAUCAUAGCUGGCAAAUGUCAGGCUGAAAUUAGUUGGCUUGUG-----UUGUACGGCUCAUAAACC---------AAAAAAAAAAGGAU--CGACCCAAUGAUGA ....((((((((((((((((....(((((..(......)..)))))..-----)))).)))))........---------..........((..--....)).))))))) ( -22.70) >DroSim_CAF1 18524 100 + 1 AUCAUUAUCAUAGCUGGCAAAUGUCAGGCUGAAAUUAGUUGGCUUGUG-----UUGUACGGCUCAUCAACCCAA---AAAAAAAAAAAAAGGAU--CGACCCAAUGAUGA ....((((((((((((((((....(((((..(......)..)))))..-----)))).)))))...........---.............((..--....)).))))))) ( -22.70) >DroEre_CAF1 17124 102 + 1 AUCAUUAUCAUAGCUGGCAAAUGUCAGGCUGAAAUUAGUUGGCUUGUG-----UUGCACGGCUCAUCAACAGGACA-AAGAGAAAAAAAGGGAU--CGACCCGAUGAUGA .((((((((..(((((((((....(((((..(......)..)))))..-----)))).))))).............-............(((..--...))))))))))) ( -32.00) >DroYak_CAF1 18488 108 + 1 AUCAUUAUCAUAGCUGGCAAAUGUCAGGCUGAAAUUAGUUGGCUUGUGUUGUGUUGUACGGCUCAUCAACAAGACGGAAAAGAAAAAAAGGGAU--CGACCCGAUGAUGA .((((((((.((((((((....)))).)))).......((.((((((..((.(((....))).))...))))).).))...........(((..--...))))))))))) ( -28.70) >DroAna_CAF1 20041 86 + 1 AUUGUCCCCAACGCUGGCGAAUGUCAGGCCGAAAUUAGUUGCCUUGUG-----UUGUGC--UUCAUCAA-----------------AAAAGGAUGAUGAUCCUGUGAGGA ........((((((.(((((...((.....))......)))))..)))-----)))..(--(((((...-----------------...(((((....))))))))))). ( -21.90) >consensus AUCAUUAUCAUAGCUGGCAAAUGUCAGGCUGAAAUUAGUUGGCUUGUG_____UUGUACGGCUCAUCAACC__A___AAAAAAAAAAAAAGGAU__CGACCCAAUGAUGA ....((((((((((((((((....((((((((......)))))))).......)))).)))))...........................((........)).))))))) (-17.14 = -17.20 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:45 2006