Locus 1319

Sequence ID 3R_DroMel_CAF1
Location 3,889,066 – 3,889,156
Length 90
Max. P 0.821709
window2160

overview

Window 0

Location 3,889,066 – 3,889,156
Length 90
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 81.50
Mean single sequence MFE -20.68
Consensus MFE -11.98
Energy contribution -14.47
Covariance contribution 2.50
Combinations/Pair 1.08
Mean z-score -2.33
Structure conservation index 0.58
SVM decision value 0.68
SVM RNA-class probability 0.821709
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3889066 90 - 27905053
-AAUUAGAAUUGCUUAGGUAAUUCAUUUCACGUUUUUGUGCCGUCUUUAAGCAUUUGAGAUGCAUGCAUCUUAAGAAGCAUGCUUUGUGAU
-.....(((((((....)))))))...(((((((((.((((.........))))..)))))((((((.((....)).))))))...)))). ( -25.60)
>DroSec_CAF1 12333 82 - 1
AAAUUAGAAUUGCUUAGGUAAUUCAUUUCA---------GGCGUCUUUAAGCAUUUGAGAUUCAUGCUUCUUAAGAAGCGUGCUUUGUGAU
......(((((((....)))))))((((((---------.((........))...)))))).((((((((....))))))))......... ( -22.30)
>DroSim_CAF1 12477 91 - 1
AAAUUAAAAUUGCUUAGGUAAUUCAUUUCAUGUUUUUCUGCCGUCUUUAAGCAUUUGAGAUUCAUGCUUCUUAAGAAGCGUGCUUUGUGAU
........((..(..((.......(((((((((((.............)))))..)))))).((((((((....))))))))))..)..)) ( -17.52)
>DroYak_CAF1 12193 84 - 1
AAAAUAGAAUCGCAUAGGAAAUUCAUUUCAUGUUUCUUUAAUGUCUUUAAGCUUUCGAGAU-------UCUUAAGAAGCAUGUUUUGUGAU
........((((((...((((....))))(((((((((....(((((.........)))))-------....)))))))))....)))))) ( -17.30)
>consensus
AAAUUAGAAUUGCUUAGGUAAUUCAUUUCAUGUUUUU_UGCCGUCUUUAAGCAUUUGAGAUUCAUGCUUCUUAAGAAGCAUGCUUUGUGAU
......(((((((....)))))))...((((...........(((((.........))))).((((((((....))))))))....)))). (-11.98 = -14.47 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:40 2006