| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,888,741 – 3,888,855 |
| Length | 114 |
| Max. P | 0.657360 |
| Location | 3,888,741 – 3,888,855 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.77 |
| Mean single sequence MFE | -27.62 |
| Consensus MFE | -19.23 |
| Energy contribution | -19.23 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3888741 114 - 27905053 UCAGCAACAGCUCCACCGGAAACGGAAACGCAGGAGCGUGUUUGAGCUGAAGACCAUAAUUUUGCAUUAGCUGCUACCGAAAACGCAAAGGGACAAGGAAAGGUAACACAAACA ((((((((((((((...(....)(....)...))))).))))...)))))..(((........(((.....)))..((.....(......).....))...))).......... ( -27.80) >DroPse_CAF1 22576 97 - 1 ACACCAAAAG---CAGCGGAAACGGAAAUGUAAGAGCGUGUUUGAAUAAAAGUCCAUAAUUCUGCAUUAGCAGCGGGAGCAACGGCAGGAG------CACUAAAAG-------- .........(---((.((....))....)))......((((((.........(((......((((....))))..)))((....))..)))------)))......-------- ( -18.20) >DroSec_CAF1 12004 114 - 1 UCAGCAAUAGCUCCGCCGGAAACGGAAACGCAGGAGCGUGUUUGAGCUGAAGCCCAUAAUUUUGCAUUAGCUGCUACCGAAAAAGCAAAGGGACAACGAGAGGUAACAGAAACA ((((((((((((((.(((....))).......))))).))))...))))).((((........((....))((((........))))..))).)..(....)............ ( -31.00) >DroSim_CAF1 12149 113 - 1 UCAA-GACAGCUCCACCGGAAACGGAAACGCAGGAGCGUGUUUGAGCUGAAGCCCAUAAUUUUGCAUUAGCUGCUACCGAAAAAGCAAAGGGACAAGGAAUGGUAACAGAAACA ....-..((((((..(((....)))((((((......))))))))))))..((((........((....))((((........))))..))).).................... ( -30.40) >DroEre_CAF1 10837 114 - 1 UCAGCAACAACUCCGCCGGAAACGGAAACGCAGGAGCGUGUUUGAGCUGAAGCCCAUAAUUUUGCAUUAGCAGCUACCGAAAUGGCAAAAGGUCGAGGAAAAGCAACAGAAACG (((((((((.((((.(((....))).......))))..))))...)))))............(((....)))(((.((....((((.....)))).))...))).......... ( -27.10) >DroYak_CAF1 11852 114 - 1 UCAGCAACAGCUCCGCCGGAAACGGAAACGCAGGAGCGUGUUUGAGCUGAAGCCCAUAAUUUUGCAUUAGCAACUACCGAAAGAGCAAAAGGUCGAGCAAAAGAAACAGAAACA ((((((((((((((.(((....))).......))))).))))...))))).((.(....((((((..(((...))).(....).))))))....).))................ ( -31.20) >consensus UCAGCAACAGCUCCACCGGAAACGGAAACGCAGGAGCGUGUUUGAGCUGAAGCCCAUAAUUUUGCAUUAGCAGCUACCGAAAAAGCAAAAGGACAAGGAAAAGUAACAGAAACA .......((((((..(((....)))..((((....))))....))))))..........((((((.....(.......).....))))))........................ (-19.23 = -19.23 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:39 2006