Locus 1316

Sequence ID 3R_DroMel_CAF1
Location 3,877,930 – 3,878,025
Length 95
Max. P 0.500000
window2157

overview

Window 7

Location 3,877,930 – 3,878,025
Length 95
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 74.01
Mean single sequence MFE -28.64
Consensus MFE -15.47
Energy contribution -15.95
Covariance contribution 0.48
Combinations/Pair 1.16
Mean z-score -1.61
Structure conservation index 0.54
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3877930 95 - 27905053
CUGCUACUGCGGCUUCUGCUGCUCAUGUGGCUUUUCCUUUUCCCAGUUAAGUCGGCACUAACGACUU----------GUCAUACGUGCGGUUUCAUCCGAGGACA
..(((((.(((((....)))))....)))))...((((.......(.(((((((.......))))))----------).).......(((......))))))).. ( -29.50)
>DroPse_CAF1 12504 91 - 1
---------CUGUUGCUGCUGUUUGUGUGGCUUUUUCUUUUGCCAGUCGAAUCCGCACUAACGACUUGCCAGUUGAUGUCAUACGUGCGGU-----GCGAGGACA
---------.(.((((.(((((.((((((((.((..((...((.(((((............))))).)).))..)).)))))))).)))))-----)))).)... ( -27.80)
>DroSec_CAF1 1294 95 - 1
CUGCUACUGCGGCUUCUGCUGCUCAUGUGGCUUUUCCUUUUGCCAGUUAAGUCGGCACUAACGACUU----------GUCAUACGUGCGGUUUCAUCCGAGGACA
..(((((.(((((....)))))....)))))...(((((..((..(((((((((.......))))))----------)....))..))((......))))))).. ( -29.60)
>DroAna_CAF1 3331 91 - 1
--------------ACUGCUGCUCGUGUGGCUUUUCCUUUCGCCAGUUAAAUCCGCACUAACGACUUGCCAGUUGAUGUCAUACGUGCGGUUUCUGGCGAGGACA
--------------...((..(....)..))...(((..(((((((......((((((...(((((....)))))..(.....)))))))...)))))))))).. ( -32.60)
>DroPer_CAF1 15212 91 - 1
---------NNNNNNNUGCUGUUUGUGUGGCUUUUUCUUUUGCCAGUCGAAUCCGCACUAACGACUUGCCAGUUGAUGUCAUACGUGCGGU-----GCGAGGACA
---------........(((((.((((((((.((..((...((.(((((............))))).)).))..)).)))))))).)))))-----......... ( -23.70)
>consensus
_________C_G_UUCUGCUGCUCGUGUGGCUUUUCCUUUUGCCAGUUAAAUCCGCACUAACGACUUGCCAGUUGAUGUCAUACGUGCGGUUUC__GCGAGGACA
.................(((((.((((((((..........((.((((..............)))).))........)))))))).))))).............. (-15.47 = -15.95 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:37 2006