Locus 1315

Sequence ID 3R_DroMel_CAF1
Location 3,864,105 – 3,864,217
Length 112
Max. P 0.926628
window2156

overview

Window 6

Location 3,864,105 – 3,864,217
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.17
Mean single sequence MFE -22.60
Consensus MFE -14.72
Energy contribution -15.09
Covariance contribution 0.37
Combinations/Pair 1.05
Mean z-score -2.55
Structure conservation index 0.65
SVM decision value 1.18
SVM RNA-class probability 0.926628
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3864105 112 - 27905053
C-AUUCAAUUCA-CACACACACUCAUCUUUCAACUCAAAGUUCUGCCAGUUGGGAAGAGGAA------UCUUCCAAAAGGGAAACCACUCGUGCAACCUGAGUUGACACCUGCACCAAUC
.-..........-................((((((((..(((.(((.(((..((((((....------))))))....((....))))).))).))).)))))))).............. ( -26.70)
>DroSec_CAF1 5199 114 - 1
CCAUUCAAUUCAAUUCACACUCUCAUCUUUCAACUCCGAGUUCUGCCAAUUCGGAUUCCGAA------ACUUCCAAAAGGGAAACCACUCGUGCAACCUGAGUUGACACCUGCACCAAUC
....((((((((.(((((.........((((...((((((((.....))))))))....)))------).........((....))....))).))..)))))))).............. ( -23.90)
>DroSim_CAF1 6650 111 - 1
CCAUUCAAUUCAAUUCACACACU---CUUUCAACUCCAAGUUCUGACAGUUGGGAUUCCGAA------UCUUCCAAAAGGGAAACCACUCGUGCAACCUGAGUUGACACCUGCACCAAUC
....((((((((.....(((...---.(..(((((.((.....))..)))))..).......------..........((....))....))).....)))))))).............. ( -20.60)
>DroYak_CAF1 5040 115 - 1
UCAUUUAAU-----UCACACAUUCAUCAUUGAACUCCAAGUUCUGCCAGUUUGGAAUCCAAAUCCAAGUCUUCCAAAAGGGAAACCACUCAUGCAACCUGAGUUUACACCUGCACCAAUC
.........-----...............(((((((...((..(((...(((((((..(........)..))))))).((....))......)))))..))))))).............. ( -19.20)
>consensus
CCAUUCAAUUCA_UUCACACACUCAUCUUUCAACUCCAAGUUCUGCCAGUUGGGAAUCCGAA______UCUUCCAAAAGGGAAACCACUCGUGCAACCUGAGUUGACACCUGCACCAAUC
.............................(((((((...(((.(((.(((..(((................)))....((....))))).))).)))..))))))).............. (-14.72 = -15.09 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:36 2006