| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,858,053 – 3,858,173 |
| Length | 120 |
| Max. P | 0.560488 |
| Location | 3,858,053 – 3,858,173 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.72 |
| Mean single sequence MFE | -36.93 |
| Consensus MFE | -27.39 |
| Energy contribution | -27.45 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3858053 120 + 27905053 CACUCCGGCAAAGAUAAAGGCCAGCAGGACCAUGUCAGUCUGGCCUGAUAUUCUGUUGGUCUCCCUUUGCACUUUUAUUCGAUCGUAUUUGGCCUGGGCGGCUUGUCUCCGGUCAAAUGA .......((((((....((((((((((((...((((((......))))))))))))))))))..))))))...............(((((((((.(((.((....)))))))))))))). ( -42.30) >DroSec_CAF1 16077 120 + 1 CACUCCGGCAAAGAUAAAGGCCAGCAGGACCAUGUCAGUCUGGCCUGAUAUCUUGUUGGUUUCUCUUUGCACCUUAAUUCGAUCGUAUUUGGCCUGAGCGGCUUGUCUCCGGUCAAAUGA .......(((((((...((((((((((((...((((((......)))))))))))))))))).)))))))...............(((((((((.((((.....).))).))))))))). ( -42.10) >DroSim_CAF1 16559 120 + 1 CACUCCGGCAAAGAUAAAGGCCAGCAGGACCAUGUCAGUCUGGCCUGAUAUCUUGUUGGUUUCCCUUUGCACCUUAAUUCGAUCGUAUUUGGCCUGGGCGGCUUGUCUUCGGUCAAAUGA .......((((((....((((((((((((...((((((......))))))))))))))))))..))))))...............(((((((((.((((.....))))..))))))))). ( -40.00) >DroEre_CAF1 16337 120 + 1 UACUCCGGCAAAGAUAAAGGACAGCAAGACAAUGUCUGUCUGGCCUGACAUCUUGUUGGUCUCUUUUUGCACCUUAAUUCGAUCGUAUUUGGCCUGGGCGGCCUGUCUCCGGUCAAAUGA .......(((((((...((..((((((((...((((..........))))))))))))..)).)))))))..........(((((.....((((.....))))......)))))...... ( -34.20) >DroWil_CAF1 19180 120 + 1 CACGGCGGCAAAAAUGAAGGCAAUCAUCACAGUAUCCGUCUGCUUGGAUAUGCUAUUCUGCUCCUUUUGCACUCGAAUCCUUUCGUAUUUGGCCUGGGCCGUCUGGCGACGUUCAAAAUU ..(((.(.((((.(((((((...((......(((((((......))))))).......(((.......)))...))...))))))).)))).))))(..((((....))))..)...... ( -29.80) >DroYak_CAF1 22203 120 + 1 UAUUCCGGCAAAGAUAAACGCCAGCAAGACCAUGUCUGUCUCACCUGACAUCUUGUUGCUCUCCUUUUGCACCUUAAUUCGGUCAUAUUUGGCCUGGGCGGCCUGUCUCCGGUCAAAUGA ....((((...(((((..(((((((((.(..(((((..........)))))..).)))))....................(((((....)))))..))))...)))))))))........ ( -33.20) >consensus CACUCCGGCAAAGAUAAAGGCCAGCAGGACCAUGUCAGUCUGGCCUGAUAUCUUGUUGGUCUCCCUUUGCACCUUAAUUCGAUCGUAUUUGGCCUGGGCGGCCUGUCUCCGGUCAAAUGA .......((((((....(((.((((((((...((((((......)))))))))))))).)))..))))))...............(((((((((.(((........))).))))))))). (-27.39 = -27.45 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:32 2006