Locus 1302

Sequence ID 3R_DroMel_CAF1
Location 3,825,845 – 3,825,965
Length 120
Max. P 0.932215
window2133

overview

Window 3

Location 3,825,845 – 3,825,965
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.50
Mean single sequence MFE -46.86
Consensus MFE -39.00
Energy contribution -39.80
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.83
SVM decision value 1.22
SVM RNA-class probability 0.932215
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3825845 120 + 27905053
UGUGCAUCAAGCACUGCGGCGGCGACGUGGUUCGCAUCGAACUGGUGAACCGGCUGCAUGGAAUCCAACUGCAGCGCAAGUUGCGUCGACUACUGCUGCUCAUGUUCCUAUCUAUCGCUU
.((((.....)))).((((((((((((((((((((.........))))))).(((((((((...)))..)))))).......))))))....)))))))..................... ( -44.00)
>DroSec_CAF1 53567 120 + 1
UGUGCAUCAAGCACUGCGGCGGCGACGUGGUUCGCAUCGAACUGGUGAACCGGCUGCAUGGAAUCCAACUGCAGCGCAAGUUGCGUCGACUACUACUGCUCGUGUUCCUAUCCAUCGCUU
.((((.....)))).((((((((....((((((((.........)))))))))))))(((((........(((((....)))))...((.(((........))).))...)))))))).. ( -41.10)
>DroSim_CAF1 58343 120 + 1
UGUGCAUCAAGCACUGCGGCGGCGACGUGGUUCGCAUCGAACUGGUGAACCGGCUGCAUGGAAUCCAACUGCAGCGCAAGUUGCGUCGACUACUGCUGCUCGUGUUCCUAUCCAUCGCUU
.((((.....)))).((((((((((((((((((((.........))))))).(((((((((...)))..)))))).......))))))....)))))))..(((...........))).. ( -44.30)
>DroEre_CAF1 44922 120 + 1
UGUUCAUCAAGCACUGCGGCGGCGACGUGGUUCGCAUCGAACUGGUGAACCGGCUGCAUGGAAUCCAACUGCAGCGCAAGCUGCGUCGACUACUGCUGCUUGUGCUCCUGGCUAUCGCUU
.........(((((.((((((((((((..(((.((.......(((....)))(((((((((...)))..)))))))).)))..)))))....)))))))..)))))...(((....))). ( -50.00)
>DroYak_CAF1 60218 120 + 1
UGUGCAUCAAGCACUGCGGCGGCGACGUGGUUCGCAUCGAACUGGUGAACCGGCUGCAUGGAAUGCAACUGCAGCGGAAGCUGCGUCAAAUUCUACUGCUUGGGUUCCUAGCUGUCGCAU
.((((.....))))(((((((((.....((((((...))))))((.(((((.(..(((((((((...((.(((((....)))))))...)))))).))).).))))))).))))))))). ( -54.90)
>consensus
UGUGCAUCAAGCACUGCGGCGGCGACGUGGUUCGCAUCGAACUGGUGAACCGGCUGCAUGGAAUCCAACUGCAGCGCAAGUUGCGUCGACUACUGCUGCUCGUGUUCCUAUCUAUCGCUU
.((((.....)))).((((((((((((((((((((.........))))))).((((((((.....))..)))))).......))))))....)))))))..................... (-39.00 = -39.80 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:13 2006