Locus 1301

Sequence ID 3R_DroMel_CAF1
Location 3,822,656 – 3,822,776
Length 120
Max. P 0.552893
window2132

overview

Window 2

Location 3,822,656 – 3,822,776
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.83
Mean single sequence MFE -34.06
Consensus MFE -32.16
Energy contribution -32.56
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.11
Structure conservation index 0.94
SVM decision value 0.04
SVM RNA-class probability 0.552893
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3822656 120 - 27905053
AUACAUAUUCAUCGUCUCCCCCGCCGACUGUUUGCACAUGUAAAUUUGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAGAUCUUGUGCUCGGCGG
....................(((((((......((((((((((.((((((...))))))))))))((((..((..(((..((((.....))))..))).))..))))..))))))))))) ( -34.00)
>DroSec_CAF1 50387 120 - 1
AUACAUAUUCAUCGUCUCCCCCGCCGACUGUUUGCACAUGUUAAUUUGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAUAUCUUGUGCUCGGCGG
....................((((((((((...((.(((((.((((((((...))))))))))))))))))....(((..((((.....))))..)))...............))))))) ( -33.20)
>DroSim_CAF1 54983 120 - 1
AUACAUAUUCAUCGUCUCCCCCGCCGACUGUUUGCACAUGUUAAUUUGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAUAUCUUGUGCUCGGCGG
....................((((((((((...((.(((((.((((((((...))))))))))))))))))....(((..((((.....))))..)))...............))))))) ( -33.20)
>DroEre_CAF1 41757 120 - 1
AUACAUAUUUAUCGUCUCCCCCGCCGACUGUUUGCACAUGUAAAUUCGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAGAUCUUGUGCUCGGCGG
............((((...((((((((..((((((....)))))))))))).))...((.((((.((((..((..(((..((((.....))))..))).))..)))).)))).)))))). ( -35.30)
>DroYak_CAF1 56111 120 - 1
AUACAAAAUCAUCUUCUCCCCCGCCGACUGUUUGCGCAUGUAAAUUCGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAGAUCUUGUGCUCGGCGG
....................((((((((((.((((((.((......)))))))).)))..((((.((((..((..(((..((((.....))))..))).))..)))).)))).))))))) ( -34.60)
>consensus
AUACAUAUUCAUCGUCUCCCCCGCCGACUGUUUGCACAUGUAAAUUUGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAGAUCUUGUGCUCGGCGG
....................((((((((((...((.(((((.((((((((...))))))))))))))))))....(((..((((.....))))..)))...............))))))) (-32.16 = -32.56 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:12 2006