Locus 130

Sequence ID 3R_DroMel_CAF1
Location 702,402 – 702,519
Length 117
Max. P 0.983598
window212

overview

Window 2

Location 702,402 – 702,519
Length 117
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 83.76
Mean single sequence MFE -36.58
Consensus MFE -28.10
Energy contribution -29.98
Covariance contribution 1.87
Combinations/Pair 1.21
Mean z-score -2.61
Structure conservation index 0.77
SVM decision value 1.95
SVM RNA-class probability 0.983598
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 702402 117 - 27905053
AGUAUAUAAGCUUCGGCUUGCCGAAGAUUGCUUCCAUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUGGAUAAGCAAGAGCUUGUCCAUGAAGGUGGAUCAGAUGCA
.((((.....((((((....)))))).(((..(((((..((.............((((((((...))))))))..((((((((((....))))))))))))..))))).))))))). ( -41.10)
>DroSec_CAF1 121778 117 - 1
AGUACAUAAGCUUCGGCUUGCCGAAGAUAGCUUCCUUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUAGAUAAGCAAGAGAUGAGCCACGGAGGUGGGUCAGACGCA
..........((((((....))))))...((.((.((((((((((((((...((.(((((((...)))))))))...))))))))))))))(((.((((....)))).))))).)). ( -44.00)
>DroSim_CAF1 123970 117 - 1
AGUAUAUAAGCUUCGGCUUGCCGAAGAUAUCUUCCUUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUAGAUAAGCAAGAGAUGAGCCACGGAGGUGGGUCAGAUGCA
.((((.(((((....)))))..((((....)))).((((((((((((((...((.(((((((...)))))))))...))))))))))))))(((.((((....)))).))).)))). ( -43.40)
>DroYak_CAF1 132388 115 - 1
AGUAUAUAAUCUUCGGCUUUCCGCAGCUAGCUUCCUUUCCGAUUUUUUUU--AAUAUGCUCUUCAGCACUAUGUUAUAGGUGAACAAGACUUGAUGCACGAGGGUGGACCAGACGUA
.........(((((.((((((.(((...(((((..((.((.........(--((((((((....))))...)))))..)).))..))).))...)))..)))))).))..))).... ( -17.80)
>consensus
AGUAUAUAAGCUUCGGCUUGCCGAAGAUAGCUUCCUUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUAGAUAAGCAAGAGAUGAGCCACGAAGGUGGAUCAGACGCA
..........((((((....))))))...((.((...((((((((((((.....((((((((...))))))))....))))))))))))..((((((((....)))))))))).)). (-28.10 = -29.98 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:58 2006