Locus 13

Sequence ID 3R_DroMel_CAF1
Location 158,967 – 159,072
Length 105
Max. P 0.743309
window26

overview

Window 6

Location 158,967 – 159,072
Length 105
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 81.43
Mean single sequence MFE -39.13
Consensus MFE -26.76
Energy contribution -28.43
Covariance contribution 1.67
Combinations/Pair 1.22
Mean z-score -1.83
Structure conservation index 0.68
SVM decision value 0.46
SVM RNA-class probability 0.743309
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 158967 105 - 27905053
AAUAUGGAAUUCCGCCUAACUCGUUUCCACCUCAGGGACCG------GGGUACGGUAUUCCAGGUGCCCCGCCGGACCAAAGCUCUUUUGGCUCUGGCUACGGUCCGCCUC
....(((((...((.......)).)))))......((((((------((((((((....))..)))))))((((((((((((...)))))).))))))...)))))..... ( -41.70)
>DroSec_CAF1 7891 105 - 1
AAUAUGGAAUGCCGCCUGGCUCGUUUCCACCUCAGGGACCG------GGGUACGGUAUUCCAGGUCCUCCGCCUGACCAAAGCUCUUUUGGCUCUGGCUAUGGUCCGCCUC
....((((((((((..((.((((.((((......)))).))------)).))))))))))))((.((...(((.((((((((...)))))).)).)))...)).))..... ( -42.00)
>DroSim_CAF1 8775 105 - 1
AAUAUGGAAUGCCGCCUGGCUCGUUUCCACCUCAGGGACCG------GGGUACGGUAUUCCAGGUCCUCCGCCUGACCAAAGCUCUUUUGGCUCUGGCUAUGGUCCGCCUC
....((((((((((..((.((((.((((......)))).))------)).))))))))))))((.((...(((.((((((((...)))))).)).)))...)).))..... ( -42.00)
>DroEre_CAF1 8262 105 - 1
AAUACGGAUUGCCGCCUGGCUCGUUUCCACCUCCGGAACCG------GGGUACGGCAUACCAGGUCCCCCGCCUGACCAAAGCGCUUUUGGCUCUGGCUAUGGUCCGCCUC
.....((..(((((..((.((((.((((......)))).))------)).)))))))..)).((.((...(((.((((((((...)))))).)).)))...)).))..... ( -36.70)
>DroYak_CAF1 7227 105 - 1
AGUACGGAAUGCCGCCUGGCUCGUUUCCACCUCAUGAACCG------GUGUACGGCAUGCCAGGUCCCCCGCCUGACCACAGCACUUUUGGGUCUGGCUAUGGUCCGCCCC
.(..(((...((((((((((((((...((((.........)------))).))))...))))))).....(((.((((.(((.....))))))).)))...))))))..). ( -37.30)
>DroAna_CAF1 7464 108 - 1
AGUAUGGUAUGCCAGCCAACGCGUUUCCACCACAGGGACCGCAACCAGGAUAUGUAAUGCCAGGUCCCA---CUGGUCAGCCCAAUUUCGGAGCUCCCUAUGGGCCACCAC
....((((((..((.((...(((.((((......)))).))).....))...))..))))))((.((((---..((..(((((......)).))).))..))))))..... ( -35.10)
>consensus
AAUAUGGAAUGCCGCCUGGCUCGUUUCCACCUCAGGGACCG______GGGUACGGUAUUCCAGGUCCCCCGCCUGACCAAAGCUCUUUUGGCUCUGGCUAUGGUCCGCCUC
.....((((((((((((....((.((((......)))).))......)))..))))))))).((.((...(((.(((((((.....))))).)).)))...)).))..... (-26.76 = -28.43 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:13 2006