Locus 1295

Sequence ID 3R_DroMel_CAF1
Location 3,818,116 – 3,818,227
Length 111
Max. P 0.535131
window2112

overview

Window 2

Location 3,818,116 – 3,818,227
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 93.06
Mean single sequence MFE -24.46
Consensus MFE -21.32
Energy contribution -21.32
Covariance contribution 0.00
Combinations/Pair 1.14
Mean z-score -1.18
Structure conservation index 0.87
SVM decision value 0.00
SVM RNA-class probability 0.535131
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3818116 111 - 27905053
CUCACUUACACUUACGCACAUUUAGCCAACCUGUUGAGUAUUUGCAGCUGUGCACUUGACUACUGGCUGAGUUUUUAGUUGCUGCAAAAACUGCUUUGCACUGAAAGAAAU
.((................(((((((((....((..(((....(((....))))))..))...)))))))))(((((((.((.(((.....)))...)))))))))))... ( -27.60)
>DroSec_CAF1 45980 111 - 1
CUCACUUACAUUUACGCACAUUUAGCCAACCUGUUGAGUAUUUGCAGCUGUGCACUUGACUACUGACUGAGUUUUUAGUUGCUGCAAAAACUGCUUAGCACUGACAAAAAA
.(((...........((.......)).....(((((((((((((((((...((....((((........))))....)).))))))))...))))))))).)))....... ( -22.90)
>DroSim_CAF1 50557 111 - 1
CUCACUUACACUUACGCACAUUUAGCCAACCUGUUGAGUAUUUGCAGCUGUGCACUUGACUACUGACUGAGUUUUUAGUUGCUGCAAAAACUGCUUAGCACUGAAAGAAAA
....(((.((.....((.......)).....(((((((((((((((((...((....((((........))))....)).))))))))...))))))))).)).))).... ( -23.90)
>DroEre_CAF1 37457 105 - 1
CUCA----CACUUACGCACAUUUAGCCAACCUGCUGAGUACUUGCAGCUGUGCACUUGACUACUGACUGAGUUUUUAGUUGCUGCAA-AACUACUUGGCACUGAAAA-AAA
....----............(((((......(((..((((.(((((((...((....((((........))))....)).)))))))-...))))..))))))))..-... ( -24.30)
>DroYak_CAF1 50124 109 - 1
CUCACUUACACUUACGCACAUUUAGCCAACCUGUUGAGUAUUUGCAGCUGUGCACUUGACUACUGACUGAGUUUUUAGUUGCUGCAAAAACUGUGUAGCACUGAAA--AAA
((((.(((.......((.......))......((..(((....(((....))))))..))...))).))))((((((((.((((((.......)))))))))))))--).. ( -23.60)
>consensus
CUCACUUACACUUACGCACAUUUAGCCAACCUGUUGAGUAUUUGCAGCUGUGCACUUGACUACUGACUGAGUUUUUAGUUGCUGCAAAAACUGCUUAGCACUGAAAAAAAA
.(((...........((.......)).....(((((((((((((((((...((....((((........))))....)).))))))))...))))))))).)))....... (-21.32 = -21.32 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:53 2006