Locus 1294

Sequence ID 3R_DroMel_CAF1
Location 3,817,975 – 3,818,082
Length 107
Max. P 0.807586
window2111

overview

Window 1

Location 3,817,975 – 3,818,082
Length 107
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 86.03
Mean single sequence MFE -20.07
Consensus MFE -16.29
Energy contribution -15.96
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -2.18
Structure conservation index 0.81
SVM decision value 0.64
SVM RNA-class probability 0.807586
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3817975 107 - 27905053
AAAUGCUCAAAGGUUUCGAAUUUUCCAAAACCUAUUGAAACUUCUUCAUAUUACCAUAUUUCUGACUGACCUAAAUAGUUAGUGAAUAAUGUGGAAAAUUAAAUCUA--
......((((((((((.(.......).)))))).))))...............(((((((..(.((((((.......)))))).)..))))))).............-- ( -20.70)
>DroSec_CAF1 45855 97 - 1
AAAUGCUCAAAGGUUUCGAAGUU------------UGAAACUUCUUCAUGUUACCAGAUUUCUGACUGACCUAAAAAGUUAGUGAAUAACAUGGAAAAUUACAACUAAU
..........(((((((((...)------------)))))))).(((((((((.(((....)))((((((.......))))))...))))))))).............. ( -20.70)
>DroSim_CAF1 50432 97 - 1
AAAUGCUCAAAGGUUUCGAAGUU------------UGAAACUUCUUCAUGUUACCAGAUUUCUGACUGACCUAAAAAGUUAGUGAAUAAUAUGGAAAAUUACAACUAAU
..........(((((((((...)------------)))))))).(((((((((.(((....)))((((((.......))))))...))))))))).............. ( -18.80)
>consensus
AAAUGCUCAAAGGUUUCGAAGUU____________UGAAACUUCUUCAUGUUACCAGAUUUCUGACUGACCUAAAAAGUUAGUGAAUAAUAUGGAAAAUUACAACUAAU
..........((((((((.................)))))))).(((((((((.(((....)))((((((.......))))))...))))))))).............. (-16.29 = -15.96 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:52 2006