| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,810,919 – 3,811,013 |
| Length | 94 |
| Max. P | 0.646386 |
| Location | 3,810,919 – 3,811,013 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 70.95 |
| Mean single sequence MFE | -23.17 |
| Consensus MFE | -7.64 |
| Energy contribution | -8.45 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3810919 94 + 27905053 --UAGCCAAAAAUAAAGGAAACCCGUAACCAUU---------------------CUAGUUGGCCGAAAAACCAUUUGGCGCGAGUUUCCUCAAAAAGCUCCCCAUUAGCCGACAAAC --.............(((((((.(((...((..---------------------.....))((((((......))))))))).)))))))......(((.......)))........ ( -18.60) >DroSec_CAF1 39028 94 + 1 --UGGCCAAAAACAAAGGAAACCGUUAACCAUU---------------------CUAGUUGGCCGAAAAACCAUUUGGCGCGAGUUUCCGCAAAAAGCUUACCAUUAGCCGACAAAC --.(((..........(((((((((((((....---------------------...))))((((((......))))))))).))))))((.....)).........)))....... ( -23.50) >DroSim_CAF1 43535 94 + 1 --UGGCCAAAAACAAAGGAAACCGUUAACCAUU---------------------CUAGUUGGCCGAAAAACCAUUUGGCGCGAGUUUCCGCAAAAAGCUCACCAUUAGCCGACAAGC --.(((..........(((((((((((((....---------------------...))))((((((......))))))))).))))))((.....)).........)))....... ( -23.50) >DroEre_CAF1 30572 81 + 1 CAUGGCCAGCAACAAAGGAAACCCAAAGCCAUU---------------------CUAGUU---------------UGGCGCGAGUUUCCGCAAAAUGCUCCCCAUUAGCCGACAAAC .((((..((((.....((((((.(...((((..---------------------......---------------))))..).))))))......))))..))))............ ( -21.90) >DroYak_CAF1 43249 94 + 1 --UGGCUGACAACAAAGGAAACCCAAAGCCAUU---------------------CUAGUUGGCCGAAAAACCACUUGGCGCGAGUUUCCGCAAAAUGCUUACCAUUAGUCGACAAAC --.((((((.......((((((.(...((((..---------------------..(((.((........)))))))))..).))))))((.....))......))))))....... ( -22.60) >DroPer_CAF1 14080 110 + 1 -------AGAAACAAAGGAAACUAAGAGCCAGUGGCUCGGAAAGAAAUAUCCGUUAAGUUGGCCAAAACAACAUUCUAGGCGAAUUUCCGUACGUGGCUACCCACUAGCCGGUUCAC -------........((....))..(((((..(((((((((.(....).)))).......))))).............((((......)....((((....))))..)))))))).. ( -28.91) >consensus __UGGCCAAAAACAAAGGAAACCCAUAACCAUU_____________________CUAGUUGGCCGAAAAACCAUUUGGCGCGAGUUUCCGCAAAAAGCUCACCAUUAGCCGACAAAC ................(....)...................................((((((.......((....)).(((......)))................)))))).... ( -7.64 = -8.45 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:45 2006