| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,806,444 – 3,806,552 |
| Length | 108 |
| Max. P | 0.754102 |
| Location | 3,806,444 – 3,806,552 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 88.13 |
| Mean single sequence MFE | -32.70 |
| Consensus MFE | -24.08 |
| Energy contribution | -26.60 |
| Covariance contribution | 2.52 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3806444 108 - 27905053 GCAUGUCAGGUCAUUAUGGUUAAUGAGAAGAUGCAUGGGCAUGGGUAUGUAGACCUUCUGAAGGUUCCUCACAAAAUGCGAACCAGCAGAAC---------GGACUUUAUGCAAAUU .((((((...((((((....))))))(......)...)))))).(((((.((.(((((((..((((((.........).)))))..))))).---------)).)).)))))..... ( -29.00) >DroSec_CAF1 34525 113 - 1 GCAUGUCAGGUCAUUAUGGUUAAUGAGAAGCUGCAUGGGCAU----AUGUAGACCUUCUGAGGGUUCCUCGCAGAAUGCGAACCAGCAGAACCGUGUACACUGACUUUAUGCAAAUU (((((((((.((((((....))))))...(.(((((((((..----..)).....(((((..(((...((((.....)))))))..))))))))))))).)))))...))))..... ( -36.90) >DroSim_CAF1 39042 112 - 1 GCAUGUCAGGUCAUUAUGGUUAAUGAGAAGCUGCAUGGGCAU----AUGUAC-CCUUCUGAGGGUUCCUCGCAGAAUGCGAACCAGCAGAACCGUGUACACUGACUUUAUGCAAAUU (((((((((.((((((....))))))...(.(((((((((..----..))..-..(((((..(((...((((.....)))))))..))))))))))))).)))))...))))..... ( -36.90) >DroEre_CAF1 25970 113 - 1 GCAUGUCAGGUCAUUAUGGUUAAUGAGAAGAUGUAUGGGCAU----AUGUAGAUCUUCUGAGGGCUCCUCAAAAAAAGCAAACCAGCAGAACCGUGUACACUGAGUUUAUGCAAAUU (((((((((((...(((((((....(((((((.((((.....----.)))).)))))))((((...)))).......((......))..))))))).)).))))...)))))..... ( -30.90) >DroYak_CAF1 38575 113 - 1 GCAUGUCAGGUCAUUAUGGUUAAUGAGAAGAUGUAUGGGCAU----AUGUAGAUCUUCUGAGGGUUCCUCGAAAAAAGAAAACCAGCAGAACGGUGCACACUGAGUUUAUGCAAAUU (((((((((.......(((((....(((((((.((((.....----.)))).)))))))((((...))))..........)))))(((......)))...))))...)))))..... ( -29.80) >consensus GCAUGUCAGGUCAUUAUGGUUAAUGAGAAGAUGCAUGGGCAU____AUGUAGACCUUCUGAGGGUUCCUCGCAAAAUGCGAACCAGCAGAACCGUGUACACUGACUUUAUGCAAAUU (((((((((.((((((....)))))).....(((((((((((....)))).....(((((..(((((............)))))..))))))))))))..)))))...))))..... (-24.08 = -26.60 + 2.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:44 2006