Locus 1285

Sequence ID 3R_DroMel_CAF1
Location 3,805,472 – 3,805,586
Length 114
Max. P 0.982225
window2100

overview

Window 0

Location 3,805,472 – 3,805,586
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.34
Mean single sequence MFE -26.16
Consensus MFE -22.36
Energy contribution -23.08
Covariance contribution 0.72
Combinations/Pair 1.03
Mean z-score -2.04
Structure conservation index 0.85
SVM decision value 1.91
SVM RNA-class probability 0.982225
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3805472 114 - 27905053
UAUUAUUUGGAAAUUUGGAAAGAAAUUGCAGGGAGAGGCCUGGAUUCAAUAGCUAUUAUAUUUUAACCAGUGCGGAAAACGAAAUAGUUGAAUCAAAAGGUUAAACAACAAUCU------
.....((((.((.(((.....))).)).))))....(((((.((((((...((((((.(.((((..((.....)))))).).))))))))))))...)))))............------ ( -16.90)
>DroSec_CAF1 33556 114 - 1
UUUUAUUUGGAAAUUUCGAAAGAAAUUGUAGGGAGAGGCCUGGAUUCAAUAGCUAUUAUAUUUUAACCAGUUCGGAAAAUGAAAUAGUUGAAUCAAAAGGUUAAACAACAAUCU------
......(((..((((((....)))))).........(((((.((((((...((((((.((((((..((.....)))))))).))))))))))))...)))))......)))...------ ( -26.10)
>DroSim_CAF1 38078 114 - 1
UUUUAUUUGGAAAUUUCGAAAGAAAUUGUAGGGAGAGGCCUGGAUUCAAUAGCUAUUAUAUUUUAACCAGUUCGGAAAAUGAAAUAGUUGAAUCAAAAGGUUAAACAACAAUCU------
......(((..((((((....)))))).........(((((.((((((...((((((.((((((..((.....)))))))).))))))))))))...)))))......)))...------ ( -26.10)
>DroEre_CAF1 25039 120 - 1
UUUUAUUUGGAAAGUUCGAAAGAAAUUGUAGGGAAAGGCCUGGAUUCCAAAGCUAUUAUAUUUUAACCAGUGCGCAAAAUGAAAUAGUGGAAUCAAAAGGUUGAACCCGUAUCUGAACUG
.....((..((...(((....)))......(((...(((((.((((((...((((((.((((((...........)))))).))))))))))))...)))))...)))...))..))... ( -31.70)
>DroYak_CAF1 37613 120 - 1
UUUUAUUUGGAAAAAUCGAAAGAAAUUGUAGGGAGAGGCCUGGAUUCCGAAGCUAUUAUAUUUUAACCAGUGCGGAAAAUGAAAUAGUGGAAUCAAAAGGUUAAACCGCUAUCUGAACUG
.....((..((....((....)).....(((((...(((((.((((((...((((((.((((((..((.....)))))))).))))))))))))...)))))...)).)))))..))... ( -30.00)
>consensus
UUUUAUUUGGAAAUUUCGAAAGAAAUUGUAGGGAGAGGCCUGGAUUCAAUAGCUAUUAUAUUUUAACCAGUGCGGAAAAUGAAAUAGUUGAAUCAAAAGGUUAAACAACAAUCU______
........(((((((((....)))))).........(((((.((((((...((((((.((((((..((.....)))))))).))))))))))))...))))).........)))...... (-22.36 = -23.08 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:42 2006