| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,795,213 – 3,795,325 |
| Length | 112 |
| Max. P | 0.890723 |
| Location | 3,795,213 – 3,795,325 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.62 |
| Mean single sequence MFE | -33.56 |
| Consensus MFE | -26.64 |
| Energy contribution | -26.32 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3795213 112 + 27905053 GCGCAGAAUUCUCCGGAUGACCCGGCAGCCAGAUAAAGGUAAUCCAAGUUGCCAACCGCAGUCUGCCUCCGCAGACACCUCACCCCGC--------UGCCUACCAUUGCAAUCGCAAUUC ..((((........((.....))((((((........((((((....)))))).......((((((....))))))..........))--------)))).....))))........... ( -32.60) >DroSec_CAF1 24558 120 + 1 GCGCAGAAUUCUCCGGAUGACCCGGCAGCCAGAUAAAGGUAAUCCAAGUUGCCAACCGCAGUCUGUCUCCGCAGACACCUCUGCCCGCUGCCCUGCUGCCUCCCAUUGCAAUUGCAAUUC ((((((........((.....))((((((((((....((((((....)))))).......((((((....))))))...))))...)))))))))).)).....(((((....))))).. ( -39.70) >DroSim_CAF1 29038 120 + 1 GCGCAGAAUUCUCCGGAUGACCCGGCAGCGAGAUAAAGGUAAUCCAAGUUGCCAACCGCAGUCUGUCUCCGCAGACACCUCUCCCCGCUGCCCUGCUGCCUCCCAUUGCAAUUGCAAUUC ((((((........((.....))((((((((((....((((((....)))))).......((((((....))))))...))))...)))))))))).)).....(((((....))))).. ( -40.00) >DroEre_CAF1 15702 114 + 1 GCGCAGAAUUCUCCGGAUGACCCGGCAGCCAGAUAAAGGUAAUCCAAGUUGCCAACCGCAGUCUGUCUCCGCAGACUCCUUUCCCCACUUCC------CCUCGCAUUGCCAAUGCAAUUC ((((......((((((.....)))).)).........((((((....))))))....))(((((((....)))))))...............------....))(((((....))))).. ( -27.40) >DroYak_CAF1 26821 113 + 1 GCGCAGCAUUCUCCGGAUGACCCGGCAGCCAGAUAAAGGUAAUCCAAGUUGCCAACCGCAGUCUGUCUCCGCAGACACCU-UCCUUACUACC------UCUCACAUUGCCAUUGCGAUUC .(((((((((.....))))....(((((...((...(((((........(((.....)))((((((....))))))....-.......))))------).))...))))).))))).... ( -28.10) >consensus GCGCAGAAUUCUCCGGAUGACCCGGCAGCCAGAUAAAGGUAAUCCAAGUUGCCAACCGCAGUCUGUCUCCGCAGACACCUCUCCCCGCUGCC____UGCCUCCCAUUGCAAUUGCAAUUC (((.......((((((.....)))).)).........((((((....))))))...))).((((((....))))))............................(((((....))))).. (-26.64 = -26.32 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:40 2006