| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,793,812 – 3,793,923 |
| Length | 111 |
| Max. P | 0.987611 |
| Location | 3,793,812 – 3,793,923 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.19 |
| Mean single sequence MFE | -48.44 |
| Consensus MFE | -40.52 |
| Energy contribution | -39.72 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.84 |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.987611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3793812 111 + 27905053 --GCGUGGCGCGAGAAG---AAGAAGCGCCAGAUAUGGGGAGCAUCGAAUCGGGUUUGGGCGUCUAGCCGACGAUAUAGGUCGAACCACUCAGCUGGGUUU----CGGCCUGCGCCGCGU --((((((((((.(...---..(((((.((((...((((((........)).(((((.(((.....)))(((.......)))))))).)))).))))))))----)..).)))))))))) ( -46.90) >DroSec_CAF1 23164 115 + 1 --GCGUGGCGCGAGAAG---AAGAAGCGCCAGAUAUGGGGAGCAUCGAAUCGGGUUUGGGCGUCUAGCCGACGAUAUAGGUCGAACCACUCAGCUGGGCUUCGUUCGGCCUGCGCCGCGU --((((((((((.(..(---(((((((.((((...((((((........)).(((((.(((.....)))(((.......)))))))).)))).))))))))).)))..).)))))))))) ( -52.90) >DroSim_CAF1 27652 115 + 1 --GCGUGGCGCGAGAAG---AAGAAGCGCCAGAUAUGGGGAGCAUCGAAUCGGGUUUGGGCGUCUAGCCGACGAUAUAGGUCGAGCCACUCAGCUGGGCUUCGUUCGGCCUGCGCCGCGU --((((((((((.(..(---(((((((.((((...((((..((.((((.((..((((.(((.....))).).)))...))))))))..)))).))))))))).)))..).)))))))))) ( -55.20) >DroEre_CAF1 14364 111 + 1 --GUGUGGCGCGAGAAG---AAGAAGCGCCACAUAUGGGGAGCAUCGAAUCGGGUCUGGGCGUCUAGCCAACGAUAUAGGUCGAACCACUCAGCUGGACUU----CGGCCUGCGCCGCAU --(((((((((......---.....)))))))))(((.((.((.....((((......(((.....)))..))))..(((((((((((......)))..))----)))))))).)).))) ( -44.60) >DroYak_CAF1 25442 116 + 1 UCGUGUGGCGCAAGAAGAAGAAGAAGCGCCAGAUAUGGGAAGCAUCGAAUCGGGUCUGGGCGUCUAGCCAACGAUAUAGGUCGAACCACUCAGCUGGACUU----CAGUCUGCGCCGCAU ..((((((((((.((.((((..((.((.(((....)))...)).))...((.((.((((((.....)))..((((....)))).......))))).)))))----)..)))))))))))) ( -42.60) >consensus __GCGUGGCGCGAGAAG___AAGAAGCGCCAGAUAUGGGGAGCAUCGAAUCGGGUUUGGGCGUCUAGCCGACGAUAUAGGUCGAACCACUCAGCUGGGCUU____CGGCCUGCGCCGCGU ..((((((((((((........((.((.(((....)))...)).))......(((...(((.....)))..((((....)))).))).)))....(((((......)))))))))))))) (-40.52 = -39.72 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:36 2006