| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,793,616 – 3,793,773 |
| Length | 157 |
| Max. P | 0.923085 |
| Location | 3,793,616 – 3,793,733 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.51 |
| Mean single sequence MFE | -33.86 |
| Consensus MFE | -26.74 |
| Energy contribution | -28.38 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.923085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3793616 117 - 27905053 UACGGCAACAAAGUUGCUCCACUCGAGCUUCUCGCAGAGAUUCGCAA-AAAAACACGCGAACUUCAAGAGAGAAUCGCUCAGAGAGGAAGAGCACGUCUUCGAUGUUUUAUGCUCCCC-- ....(((((...)))))(((.((((((((((((...(((.(((((..-........))))).)))....)))))..)))).))).))).(((((((((...))))).....))))...-- ( -35.20) >DroSec_CAF1 22970 116 - 1 UACGGCAACAAAGUUGCUCCACUCGAGCUUCUCGCAGAGAUUCGCAA-A-AAACACGCGAAUUUCAAGAGAGCACCGCACAGAGAGGAAGAGCAGGUCUUCGAUGUUUUAUUCUCCCC-- ...((((((...))))))........(((.(((...(((((((((..-.-......)))))))))..))))))........(((((..((((((.........)))))).)))))...-- ( -31.60) >DroSim_CAF1 27459 117 - 1 UACGGCAACAAAGUUGCUCCACUCGAGCUUCUCGCAGAGAUUCGCAA-AAAAACACGCGAAUUUCAAGAGAGCACCGCACAGAGAGGAAGAGCAUGUCUUCGAUGUUUUAUGCUCCCC-- ....(((((...)))))(((.(((..(((((((...(((((((((..-........)))))))))..)))))....))...))).))).(((((((.(......)...)))))))...-- ( -35.90) >DroEre_CAF1 14174 118 - 1 UACGGCAACAAAGUUGCUCCACUCGAGGUUCUCGCAGAGAUUCGCAA-AAACAUAAGC-AAUUUCAAGAGAGAACCGCAUGGAGAGCAAGAGCAUGGCUUCGAUAUUAUAUGCUGUAUAU (((((((......((((((..(....(((((((...((((((.((..-........))-))))))....)))))))....)..))))))((((...))))..........)))))))... ( -35.90) >DroYak_CAF1 25259 118 - 1 UACGGCAACAAAGUUGUUCCACUCGAGCUUCUCGCAGAGAUUCGCAACAAACACAAGCGAAAUUCAAGAGAGAAUCGCACAGAGAGGAAGAGCAUGUCUGCGAUAUUUUAUGCUCCCC-- .(((((......)))))(((.(((..(((((((...(((.(((((...........))))).)))....)))))..))...))).))).(((((((............)))))))...-- ( -30.70) >consensus UACGGCAACAAAGUUGCUCCACUCGAGCUUCUCGCAGAGAUUCGCAA_AAAAACACGCGAAUUUCAAGAGAGAACCGCACAGAGAGGAAGAGCAUGUCUUCGAUGUUUUAUGCUCCCC__ ....(((((...)))))(((.(((..(((((((...(((((((((...........)))))))))..)))))....))...))).))).(((((((............)))))))..... (-26.74 = -28.38 + 1.64)
| Location | 3,793,654 – 3,793,773 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.17 |
| Mean single sequence MFE | -32.32 |
| Consensus MFE | -25.06 |
| Energy contribution | -25.70 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3793654 119 - 27905053 CAAAUUUACGAUCGGCACAUGCAGGCGGGAGACGUCAAUGUACGGCAACAAAGUUGCUCCACUCGAGCUUCUCGCAGAGAUUCGCAA-AAAAACACGCGAACUUCAAGAGAGAAUCGCUC .........((..((.((((...((((.....)))).))))..((((((...))))))))..))(((((((((...(((.(((((..-........))))).)))....)))))..)))) ( -29.70) >DroSec_CAF1 23008 117 - 1 CAAAUUAACGAUCGGCACAUGCAGGCG-GAGACGUCAAUGUACGGCAACAAAGUUGCUCCACUCGAGCUUCUCGCAGAGAUUCGCAA-A-AAACACGCGAAUUUCAAGAGAGCACCGCAC ........(((..((.((((...((((-....)))).))))..((((((...))))))))..))).(((.(((...(((((((((..-.-......)))))))))..))))))....... ( -37.10) >DroSim_CAF1 27497 118 - 1 CAAAUUAACGAUCGGCACAUGCAGGCG-GAGACGUCAAUGUACGGCAACAAAGUUGCUCCACUCGAGCUUCUCGCAGAGAUUCGCAA-AAAAACACGCGAAUUUCAAGAGAGCACCGCAC ........(((..((.((((...((((-....)))).))))..((((((...))))))))..))).(((.(((...(((((((((..-........)))))))))..))))))....... ( -37.00) >DroEre_CAF1 14214 117 - 1 CAAAUUUACGAUCGGCACAUGCAGGCG-GCGACGUCAAUGUACGGCAACAAAGUUGCUCCACUCGAGGUUCUCGCAGAGAUUCGCAA-AAACAUAAGC-AAUUUCAAGAGAGAACCGCAU ........(((..((.((((...((((-....)))).))))..((((((...))))))))..))).(((((((...((((((.((..-........))-))))))....))))))).... ( -33.30) >DroYak_CAF1 25297 119 - 1 CAAAUUAACGAUCGAAACAUGCAUGCG-AAGACGUCAAUGUACGGCAACAAAGUUGUUCCACUCGAGCUUCUCGCAGAGAUUCGCAACAAACACAAGCGAAAUUCAAGAGAGAAUCGCAC ........(((((((....((((((((-....)))..))))).((.((((....))))))..))))..(((((...(((.(((((...........))))).)))..)))))..)))... ( -24.50) >consensus CAAAUUAACGAUCGGCACAUGCAGGCG_GAGACGUCAAUGUACGGCAACAAAGUUGCUCCACUCGAGCUUCUCGCAGAGAUUCGCAA_AAAAACACGCGAAUUUCAAGAGAGAACCGCAC ........(((.((..((((...((((.....)))).)))).))(((((...))))).....)))...(((((...(((((((((...........)))))))))..)))))........ (-25.06 = -25.70 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:35 2006