| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 697,635 – 697,739 |
| Length | 104 |
| Max. P | 0.816618 |
| Location | 697,635 – 697,739 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.81 |
| Mean single sequence MFE | -32.50 |
| Consensus MFE | -21.05 |
| Energy contribution | -21.38 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 697635 104 + 27905053 UGUGUCGGUACAAUUUAAGUUUCAAUAGGCGACUAUUUGUUGCAAUUUAAGCUGAACGCGUUUAUAAAUUGACGGCGGAAACUGCCGUCGACUGUGACUCG-----------A----CU- ...(((((((((.....(((((.(((..(((((.....))))).))).)))))...............(((((((((....).)))))))).))).)).))-----------)----).- ( -31.80) >DroVir_CAF1 145083 120 + 1 UGUGUCGGCACAAUUUAAGUUUCAAUGAGCGACUAUUUGUUGCAAUUUAAACCGAACGCGUUUAUAAAUUGACGUCGGAAACUGGCGUCGAGUGCUCAGAGGAGGCCCACCAAUACCCCC ((((....))))......(((((..((((((((.....)))((....((((((....).)))))....(((((((((....).)))))))))))))))...))))).............. ( -31.40) >DroGri_CAF1 131134 107 + 1 UGUGUCGGCACAAUUUAAGUUUCAAUGAGCGACUAUUUGUUGCAAUUUAAACUGAACGCGUUUAUAAAUUGACGUCGGAAAC-------GAGUGUUCAUAGGAC-----CCAAUAUGCC- ......((((.......(((((.(((..(((((.....))))).))).)))))(((((((((........))).(((....)-------)))))))).......-----......))))- ( -28.80) >DroEre_CAF1 113950 104 + 1 UGUGUCGGUACAAUUUAAGUUUCAAUAGGCGACUAUUUGUUGCAAUUUAAGCCGAACGCGUUUAUAAAUUGACGGAGGAAACUGCCGUCGACUGCUCAUAG-----------A----CU- .((((((((.....(((((((.(((((((......))))))).))))))))))).))))((((((.(.(((((((((....)).))))))).)....))))-----------)----).- ( -31.90) >DroMoj_CAF1 128499 119 + 1 UGUGUCGGCACAAUUUAAGUUUCAAUGAGCGACUAUUUGUUGCAAUUUAAACUGAACGCGUUUAUAAAUUGACGUCGGAAACUGGCGUCGAGUGCUCAUAGGAGGC-CACCAAUAGCCCC ((((..(((((......(((((.(((..(((((.....))))).))).)))))...............(((((((((....).)))))))))))))))))((.(((-........))))) ( -36.20) >DroPer_CAF1 122131 104 + 1 UGUGUCGGCACAAUUUAAGUUUCAAUAAGCGACUAUUUGUUGCAAUUUAAGCUGAACGCGUAUAUAAAUUGACGACGGAAACGGCCGACGACUGCGGCGGC-----------A----GU- ..(((((((.(((((((...........(((((.....))))).......((.....)).....)))))))....((....)))))))))(((((....))-----------)----))- ( -34.90) >consensus UGUGUCGGCACAAUUUAAGUUUCAAUAAGCGACUAUUUGUUGCAAUUUAAACUGAACGCGUUUAUAAAUUGACGUCGGAAACUGCCGUCGACUGCUCAUAG___________A____CC_ .(((((((.....((((((((.(((((((......))))))).))))))))))).)))).........(((((((((....).))))))))............................. (-21.05 = -21.38 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:55 2006