Locus 1279

Sequence ID 3R_DroMel_CAF1
Location 3,792,927 – 3,793,045
Length 118
Max. P 0.546016
window2092

overview

Window 2

Location 3,792,927 – 3,793,045
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.71
Mean single sequence MFE -38.64
Consensus MFE -27.36
Energy contribution -27.76
Covariance contribution 0.40
Combinations/Pair 1.15
Mean z-score -1.71
Structure conservation index 0.71
SVM decision value 0.02
SVM RNA-class probability 0.546016
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3792927 118 - 27905053
UC--CAUAUCUGGUACCAAACCAAUUUGCUUUCUCCCAGUUGAUGUGCAGUGCAUCCAGCAGUCGAGCAGGUUGGAUGCUCGCACUCGUUUCUUUUUUCGCGGUGCAGCAACCAGAGUGC
..--(((.((((((......(((((((((((.((....((((((((.....)))).))))))..))))))))))).((((.((((.(((..........)))))))))))))))))))). ( -40.60)
>DroSec_CAF1 22334 120 - 1
UCCCCGUAUAUGGUACAAACCCAAUUUGCUUUUUCCUAGUUGGUGUGCAGUGCAUCCAACAGUCGAGCAGGUCGGAUGCUCGCACUCGUUUCUUUUUUCGCGGUGCAGCAACCGGAGUGC
.....((((.((((......((.((((((((....((.(((((.((((...)))))))))))..)))))))).)).((((.((((.(((..........)))))))))))))))..)))) ( -36.80)
>DroSim_CAF1 26822 118 - 1
UC--CGCAUCUGGUACAAACCCAAUUUGCUUUUUCCUAGUUGGUGUGCAGUGCAUCCAGCAGUCGAGCAGGUCGGAUGCUCGCACUCGUUUCUUUUUUCGCGGUGCAGCAACCAGAGUGC
..--.(((((((((......((.((((((((....((.(((((.((((...)))))))))))..)))))))).)).((((.((((.(((..........))))))))))))))))).))) ( -42.40)
>DroEre_CAF1 13410 117 - 1
UC--CGUAUCUGGUAGAA-ACCAAUUUGGUUUUUCUUUGUUGGGCUGUAGUGCAUCCAGCAGUCUUGCAGGUCGGAUGCUCGCACUCGUUUCUUUUUUCGCGGUGCAGCAACCAGAGUGC
..--.(((((((((((((-(((.....))))))).(((((.(((((((.(......).))))))).))))).....((((.((((.(((..........))))))))))))))))).))) ( -37.60)
>DroYak_CAF1 24503 117 - 1
UC--CGUAUCUGGUACAACACCAAUUUAGGUUUUCCUCGUUGGGCUGCAGUGCAUCCAGCAGUUUUGCAGGCCGGAUACUCUCACUCGUUU-UAUUUUCGCGAUGCAGCAACCAGAGUGC
..--.(((((((((......(((((..(((....))).))))).(((((((((.....)))...)))))))))))))))...((((((...-......)((......)).....))))). ( -35.80)
>consensus
UC__CGUAUCUGGUACAAAACCAAUUUGCUUUUUCCUAGUUGGUGUGCAGUGCAUCCAGCAGUCGAGCAGGUCGGAUGCUCGCACUCGUUUCUUUUUUCGCGGUGCAGCAACCAGAGUGC
.....(((((((((......(((((.............)))))..(((.(.((((((.((.(.....)..)).)))))).)((((.(((..........))))))).))))))))).))) (-27.36 = -27.76 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:33 2006