Locus 1272

Sequence ID 3R_DroMel_CAF1
Location 3,785,587 – 3,785,691
Length 104
Max. P 0.804351
window2077

overview

Window 7

Location 3,785,587 – 3,785,691
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 93.91
Mean single sequence MFE -45.95
Consensus MFE -41.94
Energy contribution -42.38
Covariance contribution 0.44
Combinations/Pair 1.11
Mean z-score -1.67
Structure conservation index 0.91
SVM decision value 0.63
SVM RNA-class probability 0.804351
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3785587 104 - 27905053
AGGGGGCAGCUCGGGUGGCGGGGCAGGAGGUGGUAGGUCAUCGGGAACAUCGGUGAUCACUAGCGCCGAUCACCACAUGACCACGGUGCCUACGCCCGCCCAAU
...((((.((((.(....).))))....((..(((((.(((((((..(((.(((((((.........)))))))..))).)).))))))))))..))))))... ( -45.00)
>DroSec_CAF1 14949 104 - 1
AGGGGGCAGCUCUGGUGGCGGAGCAGGAGGCGGUAGGUCAUCGGGAACAUCGGUGAUCACUAGCGCCGAUCACCACAUGACCACGGUGCCUACGCCCGCCCAAU
...((((.((((((....))))))..(.((((.((((.(((((((..(((.(((((((.........)))))))..))).)).))))))))))))))))))... ( -49.80)
>DroSim_CAF1 18700 104 - 1
AGGGGGCAGCUCUGGUGGCGGAGCAGGAGGCGGUAGGUCAUCGGGAACAUCGGUGAUCACUAGCGCCGAUCACCACAUGACCACGGUGCCUACGCCCGCCCAAU
...((((.((((((....))))))..(.((((.((((.(((((((..(((.(((((((.........)))))))..))).)).))))))))))))))))))... ( -49.80)
>DroEre_CAF1 5614 104 - 1
AGGGGGCAGUUCGGGAGGCGGAGCAGCAGGUGGUAGGUCCUCGGGGACAUCGGUGAUCACUACCGCCGAACAUCACAUGACCACGGUGCCUACGCCCGCACAAU
.(.((((.((((.(....).)))).(((.(((((..((((....)))).((((((........))))))..........)))))..)))....)))).)..... ( -39.20)
>consensus
AGGGGGCAGCUCGGGUGGCGGAGCAGGAGGCGGUAGGUCAUCGGGAACAUCGGUGAUCACUAGCGCCGAUCACCACAUGACCACGGUGCCUACGCCCGCCCAAU
...((((.((((((....))))))....((((.((((.(((((((..(((.(((((((.........)))))))..))).)).))))))))))))).))))... (-41.94 = -42.38 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:18 2006