| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,783,361 – 3,783,481 |
| Length | 120 |
| Max. P | 0.925125 |
| Location | 3,783,361 – 3,783,481 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.60 |
| Mean single sequence MFE | -30.52 |
| Consensus MFE | -16.14 |
| Energy contribution | -20.06 |
| Covariance contribution | 3.92 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3783361 120 - 27905053 UCCGCCGAAUCAGGUGCAAUGAGGGCCAUCCAACGCUCGGCUGACCACGUUCCCUAAUUGCAUCGCGGCACACAAUGCGGCAUACAAAUGCAGCACAAACUACGACUACGACUACGGACA (((((((.....((((((((.((((......((((...((....)).)))))))).)))))))).))))......(((.((((....)))).)))....................))).. ( -35.50) >DroSec_CAF1 12801 97 - 1 UCCGCCAAAUCAGGUGCAAUGAGGGCCAUCCAACGCUCGGCUGACCACGUUCCCUAAUUGCACCGCGGCACACAACGCGGCAUACAAAUGCAGCAC-----------------------A ...(((......((((((((.((((......((((...((....)).)))))))).))))))))(((........))))))...............-----------------------. ( -31.40) >DroSim_CAF1 16520 120 - 1 UCCGCCAAAUCAGGUGCAAUGAGGGCCAUCCAACGCUCGGCUGACCACGUUCCCUAAUUGCACCGCGGCACACAACGCGGCAUACAAAUGCAGCACAAUCUACGACUACGACUACGGACA ((((((......((((((((.((((......((((...((....)).)))))))).))))))))(((........)))))).....................((....)).....))).. ( -34.00) >DroEre_CAF1 3149 114 - 1 UCCGCCGAAUCAGGUGCAAUGAGGGCCAUCCAACGCUCGGCUGACCACGUUCCCUAAUUGCACCUCGGCACACAACGUGGCAUACAAAUGCAGCACAAUCUACG------ACUACGGACA ((((((((....((((((((.((((......((((...((....)).)))))))).))))))))))))).......(((((((....))))..)))........------.....))).. ( -36.30) >DroYak_CAF1 16532 114 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCACGUUUCCUAAUUGCACCUCGGCACACAACGCGGCAUACAAAUGCAGCGCAAUCUACG------UCUACGGACA ........................................................(((((.....(.....)...((.((((....)))).)))))))....(------((....))). ( -15.40) >consensus UCCGCCAAAUCAGGUGCAAUGAGGGCCAUCCAACGCUCGGCUGACCACGUUCCCUAAUUGCACCGCGGCACACAACGCGGCAUACAAAUGCAGCACAAUCUACG______ACUACGGACA ...(((......((((((((.((((......((((...((....)).)))))))).))))))))..))).......((.((((....)))).)).......................... (-16.14 = -20.06 + 3.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:17 2006