Locus 127

Sequence ID 3R_DroMel_CAF1
Location 696,813 – 696,904
Length 91
Max. P 0.994220
window208

overview

Window 8

Location 696,813 – 696,904
Length 91
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 82.78
Mean single sequence MFE -33.73
Consensus MFE -28.99
Energy contribution -28.77
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -3.28
Structure conservation index 0.86
SVM decision value 2.46
SVM RNA-class probability 0.994220
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 696813 91 - 27905053
CGGCUUUUGCUGACAGG---AGAGGUUGGUAGAGGCGGCAGAGGCGGCAGAGGCGGCAGAGGCGGCAGAGGCCGUAGAAAGCCGCAACAGGCAG
..((((((((..((...---....))..))))))))(((....(((((....((.((....)).))....))))).....)))((.....)).. ( -37.30)
>DroSec_CAF1 116222 76 - 1
CGGCUUUUGCUGACAGGAGGAGAGGUUGGCAGAGGCGGU------------------AGAGGCGGCAGAGGCCGUAGAAAGCCGCAACAGGCAG
(.((((((((..((..........))..)))))))).).------------------....(((((....))))).....(((......))).. ( -29.50)
>DroSim_CAF1 118386 85 - 1
CGGCUUUUGCUGACAGGAGGAGAGGUUGGCAGAGGCGGUAGA---------GGCGGUAGAGGCGGCAGAGGCCGUAGAAAGCCGCAACAGGCAG
..((((((((..((..........))..)))))))).((...---------.(((((....(((((....))))).....))))).....)).. ( -34.40)
>consensus
CGGCUUUUGCUGACAGGAGGAGAGGUUGGCAGAGGCGGUAGA_________GGCGG_AGAGGCGGCAGAGGCCGUAGAAAGCCGCAACAGGCAG
(.((((((((..((..........))..)))))))).).......................(((((....))))).....(((......))).. (-28.99 = -28.77 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:54 2006