Locus 1264

Sequence ID 3R_DroMel_CAF1
Location 3,778,578 – 3,778,680
Length 102
Max. P 0.574723
window2063

overview

Window 3

Location 3,778,578 – 3,778,680
Length 102
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.45
Mean single sequence MFE -19.74
Consensus MFE -15.24
Energy contribution -15.55
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.48
Structure conservation index 0.77
SVM decision value 0.08
SVM RNA-class probability 0.574723
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3778578 102 - 27905053
------------------CACUAACUAAUCUUAAUUAGAAGACUCCAGCCAACUGAUGGAGGACCAGCCCCCUUCAUUAGUAUGCAUUGUUCUCAGCCACUUUGCACAUCAGGAAAAAAA
------------------......(((((....))))).....(((.....(((((((((((........))))))))))).((((..((........))..)))).....)))...... ( -23.90)
>DroSec_CAF1 8112 100 - 1
------------------CACUAACUAAUCUUAAUUAGAAGACUCCGACCAACUGAUUGAGGACCCGCCCCCUUCAUUAGUAUGCAUUGUUCUCAGCCACUUUACACAUCAGGGAA--AA
------------------..........((((((((((..(........)..)))))))))).(((((...((.....))...)).(((....)))...............)))..--.. ( -13.40)
>DroSim_CAF1 11785 100 - 1
------------------CACUAACUAAUCUUAAUUAGAAGACUCCGGCCAACUGAUUGAGCACCAGCCCCCUUCAUUAGUAUGCAUUGUUCUCAGCCACUUUGCACAUCUGGAAA--AA
------------------......(((((....))))).....(((((...((((((.(((..........))).)))))).((((..((........))..))))...)))))..--.. ( -15.70)
>DroYak_CAF1 9869 117 - 1
UAAAUUCCAAAUGCACUUCACUAACUAAUCUUAAUUAGAAGUCUCCAGCCAACUGAUUGAGGACCUGCC-CCUUCAUUAGUAUGCAUUGUUCUCAGUCACUUUGCACAUCAGGAAA--AA
....((((..(((.(((((..................))))).....((.((.(((((((((((.(((.-.((.....))...)))..))))))))))).)).)).)))..)))).--.. ( -25.97)
>consensus
__________________CACUAACUAAUCUUAAUUAGAAGACUCCAGCCAACUGAUUGAGGACCAGCCCCCUUCAUUAGUAUGCAUUGUUCUCAGCCACUUUGCACAUCAGGAAA__AA
........................(((((....))))).....(((.....((((((.((((........)))).)))))).((((..((........))..)))).....)))...... (-15.24 = -15.55 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:03 2006