Locus 126

Sequence ID 3R_DroMel_CAF1
Location 689,720 – 689,817
Length 97
Max. P 0.882592
window207

overview

Window 7

Location 689,720 – 689,817
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.78
Mean single sequence MFE -19.26
Consensus MFE -17.54
Energy contribution -17.07
Covariance contribution -0.47
Combinations/Pair 1.19
Mean z-score -1.40
Structure conservation index 0.91
SVM decision value 0.92
SVM RNA-class probability 0.882592
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 689720 97 - 27905053
GGCCAGA-GAAU--CCGA-GGGAUGA----GCAUCAUCAUCGCUCAUGUGUCAACAGCAUGCAAUGCGAUAUGAUUAUUAUUAUCUAACAAUACA--AUAACAAAAC-------------
.......-....--..(.-.((((((----..(((((.(((((.(((((.......)))))....)))))))))).....))))))..)......--..........------------- ( -18.40)
>DroPse_CAF1 111827 111 - 1
UGAAAGA-UAGC--AAGAGGGGAUGA----GCAGCAUCAUCGCUCAUGUGUCAACAACAUGCAAUGCGAUAUGAUUAUUAUUAUCUAACAAUACA--AUAACAAAACGGCAGCUCCCGUG
.......-....--.(((...(((((----....(((.(((((.(((((.......)))))....))))))))....))))).))).........--........((((......)))). ( -21.10)
>DroGri_CAF1 121424 106 - 1
AGAGAGA-GAAG--UAGUGGAGAUAAGCG-GCAUCAUCAUCGCUCAUGUGUCAACAACAUGCAAUGCGAUAUGAUUAUUAUUAUCUAACAAUACAAAACAACAAAACAAC----------
.......-...(--((.((.((((((...-..(((((.(((((.(((((.......)))))....)))))))))).....))))))..)).)))................---------- ( -22.20)
>DroEre_CAF1 106297 82 - 1
-------------------AGGAUGA----GCAUCAUCAUCGCUCAUGUGUCAACAGCAUGCAAUGCGAUAUGAUUAUUAUUAUCUAACAAUACA--AUAACAAAAC-------------
-------------------.((((((----..(((((.(((((.(((((.......)))))....)))))))))).....)))))).........--..........------------- ( -18.00)
>DroMoj_CAF1 120089 109 - 1
AGUGAGU-GGAGUAGAGCGGAGAUAAGCGGGCAGCAUCAUUGCUCAUGUGUCAACAACAUGCAAUGCGAUAUGAUUAUUAUUAUCUAACAAUACAAAAUAACAAAACAGU----------
.......-...(((......((((((........(((.(((((.(((((.......)))))....)))))))).......)))))).....)))................---------- ( -17.26)
>DroAna_CAF1 108456 96 - 1
--CCAAAUGAUA--GCAA-GGGAUGA----GCAUCAUCAUCGCUCAUGUGUCAACAACAUGCAAUGCGAUAUGAUUAUUAUUAUCUAACAAUACA--AUAACAAAAC-------------
--...(((((((--(((.-..((((.----....))))(((((.(((((.......)))))....))))).)).)))))))).............--..........------------- ( -18.60)
>consensus
_GACAGA_GAAG__GAGA_GGGAUGA____GCAUCAUCAUCGCUCAUGUGUCAACAACAUGCAAUGCGAUAUGAUUAUUAUUAUCUAACAAUACA__AUAACAAAAC_____________
....................((((((......(((((.(((((.(((((.......)))))....)))))))))).....)))))).................................. (-17.54 = -17.07 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:53 2006