| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,772,463 – 3,772,582 |
| Length | 119 |
| Max. P | 0.939525 |
| Location | 3,772,463 – 3,772,582 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 98.88 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -22.80 |
| Energy contribution | -22.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.939525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3772463 119 - 27905053 AUAAUUCAAUAUAUUUAUUUUAAUGGCUUACAUGCAAAUUGUGCACUUUGUUCAAUUCUUUCGUUAAUUGCUAAAUGCAACUGGCUGGCCAAAGCUAUUAAAAUUGAAAAAAAAAAAAU ....((((((........(((((((((((....((.(((((.((.....)).))))).....((((.((((.....)))).))))..))..)))))))))))))))))........... ( -22.80) >DroSec_CAF1 1977 118 - 1 AUAAUUCAAUAUAUUUAUUUUAAUGGCUUACAUGCAAAUUGUGCACUUUGUUCAAUUCUUUCGUUAAUUGCUAAAUGCAACUGGCUGGCCAAAGCUAUUAAAAUUGAAAAAAAAAACA- ....((((((........(((((((((((....((.(((((.((.....)).))))).....((((.((((.....)))).))))..))..)))))))))))))))))..........- ( -22.80) >DroSim_CAF1 5629 118 - 1 AUAAUUCAAUAUAUUUAUUUUAAUGGCUUACAUGCAAAUUGUGCACUUUGUUCAAUUCUUUCGUUAAUUGCUAAAUGCAACUGGCUGGCCAAAGCUAUUAAAAUUGAAAAAAAAAACA- ....((((((........(((((((((((....((.(((((.((.....)).))))).....((((.((((.....)))).))))..))..)))))))))))))))))..........- ( -22.80) >consensus AUAAUUCAAUAUAUUUAUUUUAAUGGCUUACAUGCAAAUUGUGCACUUUGUUCAAUUCUUUCGUUAAUUGCUAAAUGCAACUGGCUGGCCAAAGCUAUUAAAAUUGAAAAAAAAAACA_ ....((((((........(((((((((((....((.(((((.((.....)).))))).....((((.((((.....)))).))))..))..)))))))))))))))))........... (-22.80 = -22.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:50 2006