| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,756,928 – 3,757,030 |
| Length | 102 |
| Max. P | 0.505785 |
| Location | 3,756,928 – 3,757,030 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 79.86 |
| Mean single sequence MFE | -35.02 |
| Consensus MFE | -19.52 |
| Energy contribution | -21.55 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.56 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3756928 102 - 27905053 ACCCCAGGUUCCUCAUGUGCCUUCCAAAAUGGCGCACAUCUUGGUCGGGUGGCAUAGACAUUAAGUGC-GGCCAUAGUUAAUGCCAUGGUCGCCAGCCACAAC .(((((((.......((((((.........))))))...)))))..))(((((....((.....))((-((((((.((....)).))))))))..)))))... ( -36.60) >DroPse_CAF1 11870 101 - 1 --GUCCGGGUCCCCAGGUGCAUUCCAAAAUGGCGCAAAUCUUUUUCGGAUGGUAUAGACAUUUAGUGCCGGGCAUAGUUAAUGUUAUGGGUGCCUUCCCAUUC --((((((....)).((......)).....(((((..((((.....)))).((....)).....)))))))))............(((((......))))).. ( -24.70) >DroSec_CAF1 10367 102 - 1 ACCCCAGGUUCCUCAUGUGCCUUCCAAAAUGGCGCACAUCUUGGUCGGGUGGCAUAGACAUUAAGUGC-GGCCAUAGUUAAUGCCAUGGCCGCCAGCACCAGC ...(((((.......((((((.........))))))...)))))...((((.(....((.....))((-((((((.((....)).))))))))..)))))... ( -34.10) >DroEre_CAF1 10266 102 - 1 ACCUCAGGUUGCUCAUGUGCCUUCCAAAAUGGCGCACAUCUUGGCCGGGUGGCAUAGACAUUAAAUGC-GGCCGUAGUUAGUGCUAUGGCCGCCAGCCACGGC ....((((.((....((((((.........)))))))).))))((((((((((...(.(((...))))-(((((((((....))))))))))))).)).)))) ( -42.40) >DroYak_CAF1 10529 102 - 1 ACCUCAGGAUCCUCAUGUGUCUUCCAAAAUGGCGCACAUCUUGGCCGGGUGGCAUAGACAUUAAAUGC-GGCCGUAGGUAUUGCUAUGGCCGCCAGCCACGGC ....((((((.....((((((.........)))))).))))))((((((((((...(.(((...))))-((((((((......)))))))))))).)).)))) ( -39.10) >DroAna_CAF1 9535 90 - 1 GUCUCCGGAGCCACAUGUGCCUUUCAAAAUGGCGCAUUUCUUGGCCGGGUGGCAUAGACAUUAAGUGCCGGCCGUAGUUAAUGUUAUGG-------------C (((.((.(.((((.(((((((.........)))))))....))))).)).)))...((((((((.(((.....))).))))))))....-------------. ( -33.20) >consensus ACCUCAGGUUCCUCAUGUGCCUUCCAAAAUGGCGCACAUCUUGGCCGGGUGGCAUAGACAUUAAGUGC_GGCCAUAGUUAAUGCUAUGGCCGCCAGCCACAGC ...(((((.......((((((.........))))))...)))))..((.((((.....(((...)))..((((((((......)))))))))))).))..... (-19.52 = -21.55 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:36 2006