| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 688,180 – 688,278 |
| Length | 98 |
| Max. P | 0.549365 |
| Location | 688,180 – 688,278 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 77.68 |
| Mean single sequence MFE | -32.95 |
| Consensus MFE | -16.92 |
| Energy contribution | -17.25 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 688180 98 + 27905053 GAGUGUGUGCCCCUA--C----CUCCUGCAUGGGAGUGCGG-CUUGCAUCUAAUGCAUUCAAGCUGCACAUUCGACUGG-GGCAGCCAGAAAAACUUUUCCAGACC------------ ..((.((((((((..--.----.((((....))))((((((-((((.(((....).)).))))))))))........))-))))....((((....)))))).)).------------ ( -34.30) >DroSec_CAF1 107539 102 + 1 GAGUGUGUGCUCCUU--CCUGCCGCCUGCAUGGGAGUGCGG-CUUGCAUCUAAUGCAUUCGAGCUGCACAUUCGACUGG-GGCAGCCAGAAAAACUUUUCCAGACC------------ ((((((((((((...--...(((((((.(...).)).))))-).(((((...)))))...)))).))))))))..((((-((.((.........)).))))))...------------ ( -36.60) >DroSim_CAF1 107931 102 + 1 GAGUGUGUGCUCCUU--CCGGCCGCCUGCAUGGGAGUGCGG-CUUGCAUCUAAUGCAUUCAAGCUGCACAUUCGACUGG-GGCAGCCAGAAAAACUUUUCCAGACC------------ ((((....)))).((--(.(((.((((.(((.(((((((((-((((.(((....).)).)))))))))).))).).)))-))).))).)))...............------------ ( -35.20) >DroEre_CAF1 104829 81 + 1 G-----------------------CCCACAUGGGAGUGCGG-CUUGCAUCUAAUGCAUUGGAGCUGCACAUUCGACUGG-GGCAGCCGGAAAAACUUUUCCAGACC------------ (-----------------------(((.(((.(((((((((-(((((((...)))))....)))))))).))).).)))-)))....(((((....))))).....------------ ( -31.50) >DroYak_CAF1 117635 101 + 1 GAGUGUGUAUUCCUAUUCC---UACCCACAUGGGAGUGCGG-CUUGCAUCUAAUGCAUUCAAGCUGCACAUUCGACUGG-AGCAGCCGGAAAAACUUUUCCAGACC------------ ((((((........(((((---((......)))))))((((-((((.(((....).)).))))))))))))))..((((-((.((.........)).))))))...------------ ( -31.50) >DroAna_CAF1 106923 109 + 1 GCGUAUGUAUCUG---------AACCUACAUGAGAGUGCUGCCUUGCAUUUAAUGCAUUCAAAUUGCAUAUUCGGCUGAAGGCAGCAAGAAAAACUUUUCCAGACACCAGUCACAGCU ((.((((((....---------....))))))....(((((((((((.....(((((.......))))).....))..)))))))))...............(((....)))...)). ( -28.60) >consensus GAGUGUGUGCUCCU___C____CACCUACAUGGGAGUGCGG_CUUGCAUCUAAUGCAUUCAAGCUGCACAUUCGACUGG_GGCAGCCAGAAAAACUUUUCCAGACC____________ ..............................(((((((((((.(((((((...)))))....))))))))......((((......))))........)))))................ (-16.92 = -17.25 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:52 2006