| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,751,463 – 3,751,566 |
| Length | 103 |
| Max. P | 0.647739 |
| Location | 3,751,463 – 3,751,566 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.55 |
| Mean single sequence MFE | -23.90 |
| Consensus MFE | -16.25 |
| Energy contribution | -17.37 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647739 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3751463 103 - 27905053 CUCUCGGGUCGGGACCCAGCUGCUUCCCAUAUUGUGCGGACAUAGCUGCCGCAU---CGCAUCCCAUCCCAUCCAAUCCGAGCCACUCCGAUACCUCCAUACCUCC .....(((..((((..((((((..((((((...))).)))..))))))..((..---.)).))))..))).....(((.(((...))).))).............. ( -27.10) >DroSec_CAF1 5073 97 - 1 CUCUCGGGUCGGGACCCAGCUGCUUCCCAUAUUGUGCGGACCUAGCUACCGCACCAUCCCA-----UCCCAUCCAAUCCGAGCCACUCCGAUCCCUCCA----UCC ..(((((((.((((..(....)..)))).....((((((.........)))))).......-----.........))))))).................----... ( -23.40) >DroEre_CAF1 5050 85 - 1 CUCUCGGGUCGGGACCCAGCUGCU-CCCAUAUUGUGCGGACCUAGCUGCCGAACCA------------CCAUCCAAUCCAUGCCACUGCGAUC----CA----UCC .....(((((((....((((((.(-(((((...))).))).).))))).....)).------------.............((....))))))----).----... ( -21.20) >consensus CUCUCGGGUCGGGACCCAGCUGCUUCCCAUAUUGUGCGGACCUAGCUGCCGCACCA_C_CA_____UCCCAUCCAAUCCGAGCCACUCCGAUCCCUCCA____UCC ..(((((((.((((..(....)..)))).....((((((.........)))))).....................)))))))........................ (-16.25 = -17.37 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:35 2006