| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,748,730 – 3,748,850 |
| Length | 120 |
| Max. P | 0.538794 |
| Location | 3,748,730 – 3,748,850 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.78 |
| Mean single sequence MFE | -34.84 |
| Consensus MFE | -17.79 |
| Energy contribution | -17.65 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3748730 120 - 27905053 CCUCCUUGUCCAGCGAGAUCUCGAUCAGGCGCAGCUCUUUAUUGGGCAAGCUGUUCAGCUUGCCGUCCGAUUGCAACUGUGCUUUGGUGCGCCUUAGCAUGAGUGACUUCAUUAGCAGAU ....((((.....))))((((.....(((((((...........((((((((....))))))))..((((..(((....))).)))))))))))..((...((((....)))).)))))) ( -39.20) >DroVir_CAF1 2506 120 - 1 CGUCCGUAUCGAGAUUCAUUUCAAUCAAGCGUACUUCCUUUUUGGGCAAACUGUUCAGUUUGCCAUCCAGCUGGAGCUGGGCCUUGGUCCGCCGCAACAUUAGGGAUUUCAUCAGCAAAU ..........(((((((...........(((.(((.........((((((((....)))))))).((((((....))))))....))).)))...........))))))).......... ( -33.15) >DroGri_CAF1 2396 120 - 1 CAUCCUUGUCGAGAUUCAUCUCGAUCAAGCGUAUCUCUUUGUUAGGCAAACUACUGAGUUUACCAUCCAGCUGCAGUUGCGCCUUGGUGCGCCUCAACAUUAACGAUUUCAUUAGCAAAU ....((((((((((....)))))).))))(((.......((((((((.....((((((((........)))).)))).((((....)))))))).))))...)))............... ( -31.00) >DroYak_CAF1 2304 120 - 1 CCUCUUUUUCCAGCGAGAUCUCAAUCAGGCGCAAAUCUUUAUUUGGCAAGCUGGUCAGUUUGCCAUCCGAUUGCAACUGUGCUUUUGUGCGCCUCAGCAUUAGUGACUUCAUUAAGAGAU .(((..........)))(((((....(((((((..........(((((((((....)))))))))..(((..(((....)))..)))))))))).....((((((....))))))))))) ( -38.50) >DroMoj_CAF1 2395 120 - 1 CAUCCGUAUCGAGAUGCAUUUCAAUCAAACGAACUUCCUUAUUGGGCAAAUUGCUCAGCUUGCCAUCCAGCUGCAGCUGCGCCUUGGUCCGUCUCAACAUUAUGGACUUCAUCAGCAGAU ..((((((..((((((...(((........)))...((.....((((.....((((((((........))))).)))...)))).))..)))))).....)))))).............. ( -26.80) >DroAna_CAF1 2217 120 - 1 CAUCUUUGUCCAAUGAAAUCUCGAUCAUGCGCAGCUCCUUGUUGGGCAAGUUAUUGAGCUUGCCUUCCACUUGCAACUGUGCCUUGGUGCGCCGGAGCAUGAGAGACUUCAUCAACAGAU ....(((((...(((((.((((..((((((((((.....((..(((((((((....)))))))))..)).))))..(.((((......)))).)..)))))))))).)))))..))))). ( -40.40) >consensus CAUCCUUGUCCAGAGACAUCUCAAUCAAGCGCACCUCCUUAUUGGGCAAACUGUUCAGCUUGCCAUCCAGCUGCAACUGUGCCUUGGUGCGCCUCAACAUUAGGGACUUCAUCAGCAGAU ............................(((((...........((((((((....))))))))..((((..((......)).)))))))))............................ (-17.79 = -17.65 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:34 2006