| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,745,177 – 3,745,297 |
| Length | 120 |
| Max. P | 0.548214 |
| Location | 3,745,177 – 3,745,297 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.33 |
| Mean single sequence MFE | -40.76 |
| Consensus MFE | -31.22 |
| Energy contribution | -32.54 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3745177 120 + 27905053 UGGUUGGCCUUUUGUCGAUAGCGGUUCAGACCGGAGUACAAAUUGCUCCACUUGGGCUGCUCGGUGUGGUCCACCAGUUCCGAGUUAUCUUCGAUUUUGAUCUCCUGCUGGUCCUCCCGC ..((((((.....))))))((((((((((...((((((.....))))))..))))))))))(((.(.((.(((.(((.((.(((((......))))).))....))).))).)).)))). ( -38.80) >DroSec_CAF1 7197 120 + 1 UGGUUGGCCUUUUGCCGAUAGCGGUUCAGCCCGGAGUACAAAUUGCUCCACUUGGGCUGCUCGGUCUGGUCCACCAGUUCCGAGUCAUCUUCGAUAUUGAUCUCCUGUUGGUCCUCCCGC .((..((......((((((((.((.(((((((((((((.....))))))....)))))((((((.((((....))))..)))))).............)).)).))))))))))..)).. ( -45.80) >DroSim_CAF1 7030 120 + 1 UGGUUGGCCUUUUGCCGAUAGCGGUUCAGCCCGGAGUACAAAUUGCUCCACUUGGGCUGCUCGGUCUGGUCCACCAGUUCCGAGUCAUCUUCGAUCUUGAUCUCCUGUUGGUCCUCCCGC .((..((......((((((((.((.(((((((((((((.....))))))....)))))((((((.((((....))))..)))))).............)).)).))))))))))..)).. ( -45.80) >DroEre_CAF1 6895 120 + 1 UAGUUCGCCUUUUGUCGAUAGCGGUUCAGCCCGGAGUACAAAUUGCUCCACUGGGGCUGCUCAGUUUGGUCCACCUGUUCCGAGACAUCUUCGAUCUUAAUCGCCUGCUGAUCCUCACGC ....(((.(....).)))..(((...((((((((((((.....))))))....)))))).(((((..(((......(.((.(((....))).)).)......))).)))))......))) ( -31.90) >DroYak_CAF1 8005 117 + 1 UGGUUGGCCUUUUGCCGAUAGCGGUUCAGCCCGGAGUACAAAUUGCUCCACUGGGGCUGCUCCGUGUGUUCCACCUGAUCCGAGAC---UUUGAUCUGGAUCGCCUGCUGAUCCUCCCGC ..((((((.....)))))).((((.(((((..((((((.....))))))....((((......(((.....)))..(((((.(((.---.....))))))))))))))))).....)))) ( -41.50) >consensus UGGUUGGCCUUUUGCCGAUAGCGGUUCAGCCCGGAGUACAAAUUGCUCCACUUGGGCUGCUCGGUCUGGUCCACCAGUUCCGAGUCAUCUUCGAUCUUGAUCUCCUGCUGGUCCUCCCGC ..((((((.....)))))).((((..((((((((((((.....))))))....))))))(((((..(((....)))...)))))..............((((.......))))...)))) (-31.22 = -32.54 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:28 2006