Locus 1244

Sequence ID 3R_DroMel_CAF1
Location 3,744,355 – 3,744,460
Length 105
Max. P 0.592099
window2026

overview

Window 6

Location 3,744,355 – 3,744,460
Length 105
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 89.84
Mean single sequence MFE -36.33
Consensus MFE -28.00
Energy contribution -30.00
Covariance contribution 2.00
Combinations/Pair 1.12
Mean z-score -1.55
Structure conservation index 0.77
SVM decision value 0.12
SVM RNA-class probability 0.592099
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3744355 105 - 27905053
AAACGGCCGCUAUCCCUCGGCAAACACAUUAGUUGUUUGCCCCAUGAGCGUUAUGUGUCAGUGGGCCCAUGAGGUGGCCUCCAAGGUAGCGCAAAAUGCCAUUAG
....((((((((((((((((((((((.......))))))))((((..(((.....)))..))))......))))(((...))).)))))))......)))..... ( -34.90)
>DroSim_CAF1 6203 105 - 1
AAACGGUCGCUAUCCCUCGGCAAACACAUUAGUUGUUUGCCCCAUGAGCGUCAUGUGUCAGUGGGCCCAUGAAGUGGCCUCCAAGGUGGCGCAAAAUGCCAUUAG
....(((((((.......((((((((.......)))))))).((((.((.((((......)))))).)))).))))))).....(((((((.....))))))).. ( -36.60)
>DroEre_CAF1 5949 105 - 1
AAGCGGUCGGUUUCCGUCGGCCAACACAUUAGUUGUUUGCCCCAUGAACGUAAUAUGCCAGUGGGGCCAGGAGGUAACCUCCAAGGUGGCGCCAAAUGCCAUUAG
((((((((((......))))))(((......)))))))(((((((...(((...)))...)))))))..(((((...)))))..(((((((.....))))))).. ( -36.20)
>DroYak_CAF1 7145 105 - 1
AAACGGUCGCUUUCCCUCGGCAAACACUUUAGUUGUUUGCCCCAUGAGCGUUAUGUGCCAGUGGGCCCAGGAGGUAACCUCCAAGGUGGCGCAAAAUGCCAUAAG
....((((((((......(((((((((....).))))))))....)))))...((((((.....(((..(((((...)))))..)))))))))....)))..... ( -37.60)
>consensus
AAACGGUCGCUAUCCCUCGGCAAACACAUUAGUUGUUUGCCCCAUGAGCGUUAUGUGCCAGUGGGCCCAGGAGGUAACCUCCAAGGUGGCGCAAAAUGCCAUUAG
....((((((((((....(((((((((....).))))))))((((..(((.....)))..)))).....)))))))))).....(((((((.....))))))).. (-28.00 = -30.00 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:27 2006