| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,728,206 – 3,728,310 |
| Length | 104 |
| Max. P | 0.681958 |
| Location | 3,728,206 – 3,728,310 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 74.43 |
| Mean single sequence MFE | -32.32 |
| Consensus MFE | -13.00 |
| Energy contribution | -15.52 |
| Covariance contribution | 2.52 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3728206 104 + 27905053 AAUUGGGAACAGUGAAAAGUGUCAAGU-------CUAUUGACUUGACU-AUUGUACCAACCAUGUAGCAUGGCAUCGGUGCCCUGGAUUUGCAUGCAUUUUGCAGCAGAUUC .((((....)))).......(((((((-------(....)))))))).-...(((((..(((((...)))))....)))))...((((((((.(((.....))))))))))) ( -35.80) >DroSec_CAF1 4556 111 + 1 AAUUGGGAACAGUGAAAAAUGUCAAGUUUACGCUCUAUUGACUUGACU-AUUGUACCAACCAUGUAGAAUGAAACCGGCGCACUGGAUUUGCAUGCAUUUUGCAGCAGAUUC .........(((((......((((((((...........))))))))(-(((.(((.......))).)))).........)))))(((((((.(((.....)))))))))). ( -27.60) >DroSim_CAF1 4601 111 + 1 AAUUGGGAACAGUGAAAAGUGUCAAGUUUACGCUCUAUUGACAUGAAU-AUUGUACCAACCAUGUAGCAUGAAACCGGCGCACUGGAUUUGCAUGCAUUUUGCAGCAGAUUC ..((((..((((((....(((((((............)))))))...)-))))).))))((((((.((.((....))))))).)))((((((.(((.....))))))))).. ( -28.60) >DroEre_CAF1 4680 110 + 1 GUUCGG-CACAAUGGAAAUUGUCAAGUUUGCGCCUGGCAGACUUGACU-AUUGUACCAACCAUGUAGCCUGUGACCGGCGCACUGGAUUUGCAUGCAUUCUGCAGCAGAUUC ....((-.((((((......(((((((((((.....))))))))))))-))))).))..((((((.(((.......)))))).)))((((((.(((.....))))))))).. ( -39.10) >DroYak_CAF1 18330 111 + 1 ACUUGGAUACAAUGGAAAUGGUCAAGUUUACGCUUUGUAGACCUGGCU-AUUGUACCAACCACGUAGCCUGCGACCGGCGCACUGAAUUUGCAUGCAUUUUGCAGCAGAUUC ..((((.((((((((....((((((((....))))....))))...))-))))))))))....((.(((.......)))..)).((((((((.(((.....))))))))))) ( -34.70) >DroPer_CAF1 4412 97 + 1 AAUUGAGCACA--------UAACAA------GCUCUAUA-UCUGCACUAGAUCUACUUACCGUAUGGCCUGCAGGCAGGGCCGUUGCCUUGCACGCAUUUUGCAGCAGACUU ....((((...--------......------))))....-(((((...((..((((.....))).)..))((..(((((((....)))))))..))........)))))... ( -28.10) >consensus AAUUGGGAACAGUGAAAAGUGUCAAGUUUACGCUCUAUAGACUUGACU_AUUGUACCAACCAUGUAGCAUGAAACCGGCGCACUGGAUUUGCAUGCAUUUUGCAGCAGAUUC .....((.(((((.......((((((((...........))))))))..))))).))...........................((((((((.(((.....))))))))))) (-13.00 = -15.52 + 2.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:23 2006