| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,726,378 – 3,726,482 |
| Length | 104 |
| Max. P | 0.771871 |
| Location | 3,726,378 – 3,726,482 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.20 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -25.95 |
| Energy contribution | -24.87 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3726378 104 - 27905053 CU--------CCU----GCUACUUGCGCAGAUUCUGUUUCUGCUGAUUGGAGAUCACAAUCAGCAGCUUGUCGAUCACCUUGCUGGCUUGCUGUUGCUGCGAGAUGAGCGCCUGCU ..--------...----((.....((((.(((.......((((((((((.......))))))))))...)))..(((.(((((.(((........)))))))).)))))))..)). ( -35.80) >DroVir_CAF1 2808 112 - 1 GCUUGCUGGAGCU----GCUAUUUGCGCAUUUGCUGCUUCUGUUGGUUCGAGAUGACGAUCAGCAGCUUGUCGAUCACCUUGCUGGCCUGCUGCUGCUGUGAUAUGAGCGCCUGCU ((..((.(((((.----((.....))((....)).))))).....(((((..((.(((..(((((((..((((..........))))..))))))).))).)).)))))))..)). ( -34.80) >DroPse_CAF1 2833 108 - 1 CU--------UUUAGCAACUAUUUGCGCAGAUUCUGCUUUUGCUGAUUGGAAAUGACAAUCAGCAGCUUAUCGAUCACCUUGCUCGCCUGCUGUUGCUGCGAUAUGAGGGCCUGCU ..--------....((((....))))((((.....(((...((((((((.......)))))))))))..........((((..((((..((....)).))))...))))..)))). ( -33.90) >DroMoj_CAF1 2784 112 - 1 GCAUCAUGCAGCA----GUUAUUUACGCAGUUGCUGUUUCUGUUGGUUGGAGAUGACGAUCAGCAGCUUGUCAAUCACUUUGCUGGCCUGCUGCUGCUGCGAUAUGAGCACCUGCU ((.((((((((((----((.....))(((((.(((....((((((((((.......))))))))))...(.(((.....)))).)))..)))))))))))...))))))....... ( -35.60) >DroAna_CAF1 2860 103 - 1 -U--------UCG----UUUAUUUCCGCAAAUUGUGCUUCUGCUGGUUGGAAAUGACAAUUAGCAGCUUGUCGAUCACCUUGCUCGCCUGCUGCUGCUGCGAUAUGAGAGCUUGCU -.--------..(----(...((((.((((((((.((..((((((((((.......))))))))))...))))))....))))((((..((....)).))))...))))....)). ( -26.90) >DroPer_CAF1 2831 108 - 1 CU--------UUUAGCAACUAUUUGCGCAGAUUCUGCUUUUGCUGAUUGGAAAUGACAAUCAGCAGCUUAUCGAUCACCUUGCUCGCCUGCUGUUGCUGCGAUAUGAGGGCCUGCU ..--------....((((....))))((((.....(((...((((((((.......)))))))))))..........((((..((((..((....)).))))...))))..)))). ( -33.90) >consensus CU________UCU____GCUAUUUGCGCAGAUUCUGCUUCUGCUGAUUGGAAAUGACAAUCAGCAGCUUGUCGAUCACCUUGCUCGCCUGCUGCUGCUGCGAUAUGAGCGCCUGCU ..........................((((.((((....((((((((((.......))))))))))..(((((........((......))........)))))..)))).)))). (-25.95 = -24.87 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:22 2006