Locus 1236

Sequence ID 3R_DroMel_CAF1
Location 3,720,078 – 3,720,173
Length 95
Max. P 0.516634
window2018

overview

Window 8

Location 3,720,078 – 3,720,173
Length 95
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 73.11
Mean single sequence MFE -27.10
Consensus MFE -11.99
Energy contribution -12.67
Covariance contribution 0.68
Combinations/Pair 1.25
Mean z-score -1.70
Structure conservation index 0.44
SVM decision value -0.03
SVM RNA-class probability 0.516634
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3720078 95 - 27905053
CUGCUUUCGUGGUUGUGGCAAUUAAAACGCGCAAAUAUGCACAAAAA-CCUCGGUGCAAUGCAA----CUUCGUUUU-------UUUGUCACUGC-CUGCAAUCGGCA
..(((...(((((.(((((((..((((((.(((....(((((.....-.....))))).)))..----...))))))-------.))))))).))-).))....))). ( -26.00)
>DroPse_CAF1 6875 102 - 1
CU--UUUUGUUGGU----GAAUCAAAACGCGCAAAAAUGCGCUAAAAUACUCAACGGAAUUCAAUGCACUUUGUGGCUAAGACCGUUGUCGAUGCGUUGCAAUUGCCA
..--....((((((----........))(((((....))))).........))))(((((((((((((.((.(..((.......))..).))))))))).)))).)). ( -25.00)
>DroSim_CAF1 7140 94 - 1
CUGCUUUCGUGGCUGUGGCAAUUAAAACGCGCAAAUAUGCGCAAAAA-CCUCGGUGCAAUGCAA----CUUCGUUU--------UUUGUCACCGC-CUGCAAUCGGCA
..(((...(((((.(((((((..((((((((((....))))).....-......(((...))).----....))))--------)))))))).))-).))....))). ( -28.30)
>DroEre_CAF1 11811 93 - 1
CUGCUUUCGUGGUUGUGGCAAUUAAAACGCGCAAAUAUGCGCAA-AA-CCCCGGUGCAAUGCAA----CUUCGUUU--------UUUGUCACCGC-CUGCAAUCGGCA
..(((.....(((((((((.........(((((....)))))..-..-....(((((((.((..----....))..--------.))).))))))-).))))))))). ( -28.90)
>DroPer_CAF1 6755 102 - 1
CU--UUUUGUUGGU----GAAUCAAAACGCGCAAAAAUGCGCUAAAAUACUCAACGGAAUUCAAUGCACUUUGCGGCUAAGACCGUUGUCGAUGCGUUGCAAUUGCCA
..--....((((((----........))(((((....))))).........))))(((((((((((((....((((......))))......))))))).)))).)). ( -27.30)
>consensus
CUGCUUUCGUGGGUGUGGCAAUUAAAACGCGCAAAUAUGCGCAAAAA_CCUCGGUGCAAUGCAA____CUUCGUUU________UUUGUCACUGC_CUGCAAUCGGCA
...........((((..(((........(((((....))))).........((((((((..........................))).)))))...)))...)))). (-11.99 = -12.67 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:19 2006