Locus 1233

Sequence ID 3R_DroMel_CAF1
Location 3,710,637 – 3,710,729
Length 92
Max. P 0.980843
window2015

overview

Window 5

Location 3,710,637 – 3,710,729
Length 92
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 93.36
Mean single sequence MFE -19.05
Consensus MFE -16.69
Energy contribution -17.25
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.75
Structure conservation index 0.88
SVM decision value 1.87
SVM RNA-class probability 0.980843
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3710637 92 - 27905053
AAUAACUAAAAUUCGCUGGCAGCGAAUAAAUUAACUUGCAUUACGCCCGACACCAAUCGCGUCACCGUAAAGUAACAGCCCACAAA-AAAUAA
..........((((((.....))))))........((((.(((((...(((.(.....).)))..))))).))))...........-...... ( -15.00)
>DroSec_CAF1 68828 93 - 1
AAUAACUGAAAUUCGCUGGCAGCGAAUAAAUUAACUUGCAUUACGCCCGACACCAAUCGCGUCAGCGUAAAGUAACAGCCCACAAAAAAAUAA
.....(((..((((((.....))))))........((((.((((((..(((.(.....).))).)))))).)))))))............... ( -21.10)
>DroSim_CAF1 71727 93 - 1
AAUAACUGAAAUUCGCUGGCAGCGAAUAAAUUAACUUGCAUUACGCCCGACACCAAUCGCGUCAGCGUAAAGUAACAGCCCACAAAAAAAUAA
.....(((..((((((.....))))))........((((.((((((..(((.(.....).))).)))))).)))))))............... ( -21.10)
>DroYak_CAF1 67692 88 - 1
AAUAACUGAAAUUCGUUGGCAGCGAAUAAAUUAACUUGCAUUACGCCCGACACCAAUCGCGUCAGCGUCAAGUAACAGUACAAAAA-----AA
....((((..((((((.....))))))......(((((....((((..(((.(.....).))).)))))))))..)))).......-----.. ( -19.00)
>consensus
AAUAACUGAAAUUCGCUGGCAGCGAAUAAAUUAACUUGCAUUACGCCCGACACCAAUCGCGUCAGCGUAAAGUAACAGCCCACAAA_AAAUAA
.....(((..((((((.....))))))........((((.((((((..(((.(.....).))).)))))).)))))))............... (-16.69 = -17.25 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:16 2006