Locus 1231

Sequence ID 3R_DroMel_CAF1
Location 3,707,820 – 3,707,918
Length 98
Max. P 0.628431
window2010

overview

Window 0

Location 3,707,820 – 3,707,918
Length 98
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 83.70
Mean single sequence MFE -26.98
Consensus MFE -18.48
Energy contribution -19.26
Covariance contribution 0.78
Combinations/Pair 1.26
Mean z-score -2.27
Structure conservation index 0.68
SVM decision value 0.19
SVM RNA-class probability 0.628431
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3707820 98 + 27905053
AUUGAUGAGCACGACUUGAUAGACAUUUCGUGCUCGUUC-GACAUUCAUGUAUAGU--UUUUAAUGGCUGUCGAAUAGGAAAAUCAAUAUGAAAAGUUGUU
((((((((((((((..((.....))..))))))))((((-((((..(((.......--.....)))..))))))))......))))))............. ( -30.70)
>DroPse_CAF1 68389 101 + 1
GUUGAUGGGGACGGCUUGAUAGACAUUUCGUGCCUGUUCUGACGUUCGUGCGCAGUAUUUUUAAUGCCUGUCGAUAGGGAAAAUCAAUACGGAAAAUUAUU
(((((((((((((((.(((........))).))).)))(((.(((....))))))...........))))))))).......................... ( -21.70)
>DroSec_CAF1 65698 87 + 1
AUUGAUAGGC-----------GACAUUUCGUGCUCGUUC-GACAUUCGUGUAUAGU--UUUUAAUGGCUGUCGAAUAGGAAAAUCAAUAUGAAAUGUUGUU
.......(((-----------(((((((((((((..(((-((((..(((.......--.....)))..)))))))..))........)))))))))))))) ( -25.70)
>DroSim_CAF1 68816 98 + 1
AUUGAUGAGCACGACUUGAUAGACAUUUCGUGCUCGUUC-GACAUUCGUGUAUAGU--UUUUAAUGGCUGUCGAAUAGGAAAAUCAAUAUGAAAAGUUGUU
((((((((((((((..((.....))..))))))))((((-((((..(((.......--.....)))..))))))))......))))))............. ( -30.30)
>DroEre_CAF1 67437 98 + 1
AUUGAUGAGCACGACUUGAUAGACAUUUCGUGCUCGUUC-GACAUUCGUGUACACU--UUUUAAUGGCUGUCGAAUAGGAAAAUCAAUAUGAAAAGUUGUU
((((((((((((((..((.....))..))))))))((((-((((..(((.......--.....)))..))))))))......))))))............. ( -30.30)
>DroPer_CAF1 74239 101 + 1
GUUGAUGGGGACGGCUUGAUAGACAUUUCGUGCCUGUUCCGACGUUCGUGCGCAGUAUUUUUAAUGCCUGUCGAUAGGGAAAAUCAAUACGGAAAAUUAUU
((((((.((((((((.(((........))).))).)))))....(((.((((((((((.....))).))).)).)).)))..))))))............. ( -23.20)
>consensus
AUUGAUGAGCACGACUUGAUAGACAUUUCGUGCUCGUUC_GACAUUCGUGUACAGU__UUUUAAUGGCUGUCGAAUAGGAAAAUCAAUAUGAAAAGUUGUU
((((((((((((((..((.....))..))))))))((((.((((..(((..............)))..))))))))......))))))............. (-18.48 = -19.26 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:12 2006